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The map label for this gene is ywpD

Identifier: 16080688

GI number: 16080688

Start: 3742384

End: 3743220

Strand: Direct

Name: ywpD

Synonym: BSU36350

Alternate gene names: 16080688

Gene position: 3742384-3743220 (Clockwise)

Preceding gene: 16080686

Following gene: 16080691

Centisome position: 88.77

GC content: 40.74

Gene sequence:

>837_bases
ATGAAAATTCGCGAACGATTCAGCATGGTTGATCTTCCGGTTCTGATCATTACAGCTGCCATTATCGGCCATGACAAATA
CAAGGCTTTTCATGCCGGAGCGAATGACATTTTGCAAAAACCCTATCATTACTCTGAATTTATGGCGCGTATTCAAAACC
TGATAATGATGAAACATACAGCAAATCAAGCCACAAGAATGGAAATGGCGTTTCTCCAGTCGCAAATCAAGCCTCATTTT
CTTTATAATGTATTAAACACGATTATTTCTCTCACTCATTTGGATATTGAAAAGGCCCGGGAGGTAACAGAGGAATTTAC
CAACTATTTAAGAATGAGTTTTGACTTTCAAAATACATCAGCCATCAGTTCCTTCAGACATGAGCTTTCGATTATCAATT
CCTATCTTTCTATAGAAAAGACGCGATTCAGTAATCGGCTTGAGGTTCTTTTCGATATAGATGAAGACATTGACTTTATC
CTTCCGCCTTTAATGATTCAGCCCTTGGTGGAAAATGCCGTTCTTCACGGTGTCAGCAAGAAAAGAGGCGGAGGATGGAT
CAAACTGACAGCTAAAAAACAAAGCAAAAATGAGTATCACATCAAAGTAGAGGATAACGGTCCCGGGATAACTCCGGAAA
AACAAATAGATCTCTTATCAACGGATTTTGATCGCAGCGTCGGATTGAAAAATATCAATCAGCGGCTGAAACATTTTTGC
GGAAGCGAGTTGATGATCAGCAGCACTCCGGATGCAGGCACCTCTGTCTCAATGCTCATTCATCTCGCTGAAACAACAGG
AAGCCCTAAAGAACTGAAGGACACAGAACGAACCTAA

Upstream 100 bases:

>100_bases
AACCGGCTGGCGCTTTCGTTTCAACAAAAGCGTATTGTCCCGGTGCAAGGCCTGAAGCTGTGACTTGATGATGCCGGATA
TGACTGGTTTCGAAGTCTGT

Downstream 100 bases:

>100_bases
ACGAAAATTGAGATAAAAAAAGACGCCGTTTCTAACGGCATCTTTTTTATTCCGGCGACTTTGCTTGCTGCTTCAGCAGG
TCTCTGATTTCTTTCAGCAG

Product: two-component sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MKIRERFSMVDLPVLIITAAIIGHDKYKAFHAGANDILQKPYHYSEFMARIQNLIMMKHTANQATRMEMAFLQSQIKPHF
LYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTSAISSFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFI
LPPLMIQPLVENAVLHGVSKKRGGGWIKLTAKKQSKNEYHIKVEDNGPGITPEKQIDLLSTDFDRSVGLKNINQRLKHFC
GSELMISSTPDAGTSVSMLIHLAETTGSPKELKDTERT

Sequences:

>Translated_278_residues
MKIRERFSMVDLPVLIITAAIIGHDKYKAFHAGANDILQKPYHYSEFMARIQNLIMMKHTANQATRMEMAFLQSQIKPHF
LYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTSAISSFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFI
LPPLMIQPLVENAVLHGVSKKRGGGWIKLTAKKQSKNEYHIKVEDNGPGITPEKQIDLLSTDFDRSVGLKNINQRLKHFC
GSELMISSTPDAGTSVSMLIHLAETTGSPKELKDTERT
>Mature_278_residues
MKIRERFSMVDLPVLIITAAIIGHDKYKAFHAGANDILQKPYHYSEFMARIQNLIMMKHTANQATRMEMAFLQSQIKPHF
LYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTSAISSFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFI
LPPLMIQPLVENAVLHGVSKKRGGGWIKLTAKKQSKNEYHIKVEDNGPGITPEKQIDLLSTDFDRSVGLKNINQRLKHFC
GSELMISSTPDAGTSVSMLIHLAETTGSPKELKDTERT

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1788723, Length=206, Percent_Identity=35.4368932038835, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788446, Length=197, Percent_Identity=28.9340101522843, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWPD_BACSU (P94586)

Other databases:

- EMBL:   Z83337
- EMBL:   AL009126
- PIR:   F70065
- RefSeq:   NP_391516.1
- ProteinModelPortal:   P94586
- EnsemblBacteria:   EBBACT00000000275
- GeneID:   936914
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU36350
- NMPDR:   fig|224308.1.peg.3642
- GenoList:   BSU36350
- GeneTree:   EBGT00050000000012
- OMA:   INRANEM
- BioCyc:   BSUB:BSU36350-MONOMER
- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR010559
- InterPro:   IPR001789
- Gene3D:   G3DSA:3.30.565.10
- SMART:   SM00387

Pfam domain/function: PF02518 HATPase_c; PF06580 His_kinase; SSF55874 ATP_bd_ATPase; SSF52172 CheY_like

EC number: 2.7.3.-

Molecular weight: Translated: 31773; Mature: 31773

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRERFSMVDLPVLIITAAIIGHDKYKAFHAGANDILQKPYHYSEFMARIQNLIMMKHT
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHC
ANQATRMEMAFLQSQIKPHFLYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTS
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCHH
AISSFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFILPPLMIQPLVENAVLHGVSK
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHHCCCC
KRGGGWIKLTAKKQSKNEYHIKVEDNGPGITPEKQIDLLSTDFDRSVGLKNINQRLKHFC
CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHCCCHHHCCHHHHHHHHHHHC
GSELMISSTPDAGTSVSMLIHLAETTGSPKELKDTERT
CCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCC
>Mature Secondary Structure
MKIRERFSMVDLPVLIITAAIIGHDKYKAFHAGANDILQKPYHYSEFMARIQNLIMMKHT
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHC
ANQATRMEMAFLQSQIKPHFLYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTS
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCHH
AISSFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFILPPLMIQPLVENAVLHGVSK
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHHCCCC
KRGGGWIKLTAKKQSKNEYHIKVEDNGPGITPEKQIDLLSTDFDRSVGLKNINQRLKHFC
CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHCCCHHHCCHHHHHHHHHHHC
GSELMISSTPDAGTSVSMLIHLAETTGSPKELKDTERT
CCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377