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The map label for this gene is lytB

Identifier: 16080616

GI number: 16080616

Start: 3660648

End: 3662765

Strand: Reverse

Name: lytB

Synonym: BSU35630

Alternate gene names: 16080616

Gene position: 3662765-3660648 (Counterclockwise)

Preceding gene: 16080617

Following gene: 16080615

Centisome position: 86.89

GC content: 37.54

Gene sequence:

>2118_bases
TTGAAATCTTGCAAACAATTGATAGTGTGTTCACTTGCTGCAATCTTATTATTGATTCCATCAGTTTCTTTTGCAGCAGA
CTCAAACATCTCAGTTAAATTGTTAAATTATATTGGAAATAAATCTAGCATCAGTCTATCGCCAACAGGATTTTATAAAG
TAACTGGAGATAATGTTGCTGTTACGGATCGTTTTGCAGGCGCTTCACGATACGAAACTGCGACTCTTGCATCCAACAGC
CAGTGGAAAAATCCTAATACAGTGATATTGGTGAACCGAGATATTTTTATTGATGCATTGCCTGTTATTCCATTGGCGAA
AAAACTGAACGCACCAGTTTTATTTACTCAGCCTGACACGTTAACAAAAACTACTGAAAGACAAATTGCTAAGTTTAACC
CTGATAATATTTTAATCATTGGGGGAGCGCGAAGCATTTCAAAAGACGTAGAAAACAAGCTGAAATCATATGGCGCTGTG
AAAAGGATAAGCGGAAAAAATAGATATGTCTTATCAGAAAATATTGCAAAGCAAATGGGCAGCTATGATAAAGCGATCGT
TGTAACCGGAAGAGTATTTCAAGACGCTTTAGCCATTGCTCCATATGCAGCAGCACACGGATACCCTATTTTGCTTACAG
AGAAAGACAAGCTTCCGGATTATGATTTGCCAAAACAAGTCATCATTATAGGCAGTTCATTTAGCGTCAGTGATAGTGTA
GAAAACCAAATTAAAAAAACTTCAACTGTGCAAAGGATTCCTGGATCAACCAGATATGAACTTACGGCAAATATAATTAA
GCAACTAAAGTTGAAGGCTGATAAAGTCGTAATGACGAACGGGACAAAATATGCAGACGTATTGATAGGCGCTTCGCTTG
CCTCGAAGAAAAACAGCCAAATTTTATTTGTTAAACAAGATAGCGTTCCGGCTGCGGCTAAAAGTATAACGAAAGATAAA
GCCACATATGCATACGACTTTATTGGAAGTACCAGTTCAATTTCTGCTGAAGTTGAGAATTCACTTGCTGATGAATTTTA
TTTAGCTGACGGTGGCACCTATAATCTAAAAATCAACAGCGGAAAATTAAACCTTGAAAACATCAAAACTTACGGAAACT
CCCTAAGAATTAAACCAGAAAACTATTCTACTTCAAACAGAATTAGTCTTGATGGAAAGCAGTATCTTGGCACGGTTAAT
TTCTCTATTGAGTCTACTAAATATATCCGACCGGTAAATGAGAATATTCCATTTGAGGATTACTTAAAAGGAGTAATTCC
GAATGAAATGCCTGCTAGCTGGTCACTTGAGGCTCTTAAAGCACAGACTGTCGCTGCAAGAACCTACTCAATAACAAAAA
CAGGAACTACTGTACCTGATACAACCGCTTTTCAAGTTTATGGTGGCTACAGTTGGAATTCGAATACCAATAAAGCGGTA
GAGCAAACGAAGGGGAAAGTTCTGAAATATAATGGATCTCTTATAACTGCAGCTTATTCTTCCAGTAATGGTGGTTACAC
AGAAGCTAGTAATGAAGTGTGGTCGTCAAGTGTACCTTACTTGATTGCAAAAAAAGATACAAAGGATCCTCAAATAGGCT
GGACGCTTACTTTGTCAAAACAACAGCTAGATACGAAATCTTTGGACTTAACGAAGCCTTCTTCTTGGTGGTCTTCAGCG
ACTGAAACTGATTCTGCAAGACTTTCCGGAGTTAAGAACTGGATCTTGAAAAATAAAGAAACAAGCGCTGATTCTGTCAA
AATTGCAAGTATTGACGATTTAAGCTTTAGTGGAACGACACAAGGGCAGCGTGCAAAAACAGCATCGATGAAAGTGAAGT
ATTTTGTTAAAAGCAGTACTGGCTCCTATAACTTGAGCAAAATTACAACCATTAGTGTACCAACAAGTGAGTTAAGAACA
ATGATTGGAGCGACTGTATTTAAAAGTACTTATGTGACTGTAAAAAAAGATACTTCAAAGTACACAATCAGCGGTAAAGG
ATATGGTCACGGGATCGGAATGAGTCAATATGGAGCAAAAGCAAGAGCAGAAGCTGGAGATTCATATAGTTCAATTTTGA
AATTTTACTATCCAGGTACAACTCTGACAAGTTATTGA

Upstream 100 bases:

>100_bases
GAGATAAGGTCACGATTACATATGAAAAAAATGATGAGGGTCAGCTTCTGTTAAAAGATATTGAACGTGCCAACTAAGAT
ATAGGGAGGAACCTGAAATT

Downstream 100 bases:

>100_bases
TTATTTTAGGATATAACGCCATTTAAGGAGGAAATCAATTGCGTTCTTATATAAAAGTCCTAACAATGTGTTTTCTGGGG
CTCATACTTTTTGTGCCAAC

Product: modifier protein of major autolysin LytC

Products: NA

Alternate protein names: Cell wall-associated polypeptide CWBP76; CWBP76; Modifier protein of major autolysin

Number of amino acids: Translated: 705; Mature: 705

Protein sequence:

>705_residues
MKSCKQLIVCSLAAILLLIPSVSFAADSNISVKLLNYIGNKSSISLSPTGFYKVTGDNVAVTDRFAGASRYETATLASNS
QWKNPNTVILVNRDIFIDALPVIPLAKKLNAPVLFTQPDTLTKTTERQIAKFNPDNILIIGGARSISKDVENKLKSYGAV
KRISGKNRYVLSENIAKQMGSYDKAIVVTGRVFQDALAIAPYAAAHGYPILLTEKDKLPDYDLPKQVIIIGSSFSVSDSV
ENQIKKTSTVQRIPGSTRYELTANIIKQLKLKADKVVMTNGTKYADVLIGASLASKKNSQILFVKQDSVPAAAKSITKDK
ATYAYDFIGSTSSISAEVENSLADEFYLADGGTYNLKINSGKLNLENIKTYGNSLRIKPENYSTSNRISLDGKQYLGTVN
FSIESTKYIRPVNENIPFEDYLKGVIPNEMPASWSLEALKAQTVAARTYSITKTGTTVPDTTAFQVYGGYSWNSNTNKAV
EQTKGKVLKYNGSLITAAYSSSNGGYTEASNEVWSSSVPYLIAKKDTKDPQIGWTLTLSKQQLDTKSLDLTKPSSWWSSA
TETDSARLSGVKNWILKNKETSADSVKIASIDDLSFSGTTQGQRAKTASMKVKYFVKSSTGSYNLSKITTISVPTSELRT
MIGATVFKSTYVTVKKDTSKYTISGKGYGHGIGMSQYGAKARAEAGDSYSSILKFYYPGTTLTSY

Sequences:

>Translated_705_residues
MKSCKQLIVCSLAAILLLIPSVSFAADSNISVKLLNYIGNKSSISLSPTGFYKVTGDNVAVTDRFAGASRYETATLASNS
QWKNPNTVILVNRDIFIDALPVIPLAKKLNAPVLFTQPDTLTKTTERQIAKFNPDNILIIGGARSISKDVENKLKSYGAV
KRISGKNRYVLSENIAKQMGSYDKAIVVTGRVFQDALAIAPYAAAHGYPILLTEKDKLPDYDLPKQVIIIGSSFSVSDSV
ENQIKKTSTVQRIPGSTRYELTANIIKQLKLKADKVVMTNGTKYADVLIGASLASKKNSQILFVKQDSVPAAAKSITKDK
ATYAYDFIGSTSSISAEVENSLADEFYLADGGTYNLKINSGKLNLENIKTYGNSLRIKPENYSTSNRISLDGKQYLGTVN
FSIESTKYIRPVNENIPFEDYLKGVIPNEMPASWSLEALKAQTVAARTYSITKTGTTVPDTTAFQVYGGYSWNSNTNKAV
EQTKGKVLKYNGSLITAAYSSSNGGYTEASNEVWSSSVPYLIAKKDTKDPQIGWTLTLSKQQLDTKSLDLTKPSSWWSSA
TETDSARLSGVKNWILKNKETSADSVKIASIDDLSFSGTTQGQRAKTASMKVKYFVKSSTGSYNLSKITTISVPTSELRT
MIGATVFKSTYVTVKKDTSKYTISGKGYGHGIGMSQYGAKARAEAGDSYSSILKFYYPGTTLTSY
>Mature_705_residues
MKSCKQLIVCSLAAILLLIPSVSFAADSNISVKLLNYIGNKSSISLSPTGFYKVTGDNVAVTDRFAGASRYETATLASNS
QWKNPNTVILVNRDIFIDALPVIPLAKKLNAPVLFTQPDTLTKTTERQIAKFNPDNILIIGGARSISKDVENKLKSYGAV
KRISGKNRYVLSENIAKQMGSYDKAIVVTGRVFQDALAIAPYAAAHGYPILLTEKDKLPDYDLPKQVIIIGSSFSVSDSV
ENQIKKTSTVQRIPGSTRYELTANIIKQLKLKADKVVMTNGTKYADVLIGASLASKKNSQILFVKQDSVPAAAKSITKDK
ATYAYDFIGSTSSISAEVENSLADEFYLADGGTYNLKINSGKLNLENIKTYGNSLRIKPENYSTSNRISLDGKQYLGTVN
FSIESTKYIRPVNENIPFEDYLKGVIPNEMPASWSLEALKAQTVAARTYSITKTGTTVPDTTAFQVYGGYSWNSNTNKAV
EQTKGKVLKYNGSLITAAYSSSNGGYTEASNEVWSSSVPYLIAKKDTKDPQIGWTLTLSKQQLDTKSLDLTKPSSWWSSA
TETDSARLSGVKNWILKNKETSADSVKIASIDDLSFSGTTQGQRAKTASMKVKYFVKSSTGSYNLSKITTISVPTSELRT
MIGATVFKSTYVTVKKDTSKYTISGKGYGHGIGMSQYGAKARAEAGDSYSSILKFYYPGTTLTSY

Specific function: Possibly involved in cell wall metabolism during spore formation. Enhances the amidase activity approximately threefold

COG id: COG2385

COG function: function code D; Sporulation protein and related proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein. Secreted, cell wall. Note=Cell wall localization shown in PubMed:11987133

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CWBA_BACSU (Q02113)

Other databases:

- EMBL:   M87645
- EMBL:   D10388
- EMBL:   AL009126
- PIR:   A41322
- RefSeq:   NP_391443.1
- EnsemblBacteria:   EBBACT00000001127
- GeneID:   936795
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35630
- NMPDR:   fig|224308.1.peg.3569
- GenoList:   BSU35630
- GeneTree:   EBGT00050000000332
- HOGENOM:   HBG338365
- OMA:   NIPFEDY
- ProtClustDB:   CLSK887970
- BioCyc:   BSUB:BSU35630-MONOMER
- InterPro:   IPR007253
- InterPro:   IPR013486
- InterPro:   IPR013693
- TIGRFAMs:   TIGR02669

Pfam domain/function: PF04122 CW_binding_2; PF08486 SpoIID

EC number: NA

Molecular weight: Translated: 76730; Mature: 76730

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSCKQLIVCSLAAILLLIPSVSFAADSNISVKLLNYIGNKSSISLSPTGFYKVTGDNVA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEECCCCEE
VTDRFAGASRYETATLASNSQWKNPNTVILVNRDIFIDALPVIPLAKKLNAPVLFTQPDT
EEECCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEECCCCCHHHHHCCCCEEEECCCC
LTKTTERQIAKFNPDNILIIGGARSISKDVENKLKSYGAVKRISGKNRYVLSENIAKQMG
HHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCEEECHHHHHHHC
SYDKAIVVTGRVFQDALAIAPYAAAHGYPILLTEKDKLPDYDLPKQVIIIGSSFSVSDSV
CCCCEEEEECHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHH
ENQIKKTSTVQRIPGSTRYELTANIIKQLKLKADKVVMTNGTKYADVLIGASLASKKNSQ
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEECCCEEEHEEEECHHCCCCCCE
ILFVKQDSVPAAAKSITKDKATYAYDFIGSTSSISAEVENSLADEFYLADGGTYNLKINS
EEEEECCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCEEEEEEEC
GKLNLENIKTYGNSLRIKPENYSTSNRISLDGKQYLGTVNFSIESTKYIRPVNENIPFED
CEEEHHHHHCCCCEEEEECCCCCCCCEEEECCHHEEEEEEEEECCCEEEEECCCCCCHHH
YLKGVIPNEMPASWSLEALKAQTVAARTYSITKTGTTVPDTTAFQVYGGYSWNSNTNKAV
HHHCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHH
EQTKGKVLKYNGSLITAAYSSSNGGYTEASNEVWSSSVPYLIAKKDTKDPQIGWTLTLSK
HHHCCCEEEECCCEEEEEEECCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCEEEEEECH
QQLDTKSLDLTKPSSWWSSATETDSARLSGVKNWILKNKETSADSVKIASIDDLSFSGTT
HHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC
QGQRAKTASMKVKYFVKSSTGSYNLSKITTISVPTSELRTMIGATVFKSTYVTVKKDTSK
CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHHEEEEEEEECCCE
YTISGKGYGHGIGMSQYGAKARAEAGDSYSSILKFYYPGTTLTSY
EEEECCCCCCCCCHHHCCCCHHHCCCCCHHHHHEEEECCCEECCC
>Mature Secondary Structure
MKSCKQLIVCSLAAILLLIPSVSFAADSNISVKLLNYIGNKSSISLSPTGFYKVTGDNVA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEECCCCEE
VTDRFAGASRYETATLASNSQWKNPNTVILVNRDIFIDALPVIPLAKKLNAPVLFTQPDT
EEECCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEECCCCCHHHHHCCCCEEEECCCC
LTKTTERQIAKFNPDNILIIGGARSISKDVENKLKSYGAVKRISGKNRYVLSENIAKQMG
HHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCEEECHHHHHHHC
SYDKAIVVTGRVFQDALAIAPYAAAHGYPILLTEKDKLPDYDLPKQVIIIGSSFSVSDSV
CCCCEEEEECHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHH
ENQIKKTSTVQRIPGSTRYELTANIIKQLKLKADKVVMTNGTKYADVLIGASLASKKNSQ
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEECCCEEEHEEEECHHCCCCCCE
ILFVKQDSVPAAAKSITKDKATYAYDFIGSTSSISAEVENSLADEFYLADGGTYNLKINS
EEEEECCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCEEEEEEEC
GKLNLENIKTYGNSLRIKPENYSTSNRISLDGKQYLGTVNFSIESTKYIRPVNENIPFED
CEEEHHHHHCCCCEEEEECCCCCCCCEEEECCHHEEEEEEEEECCCEEEEECCCCCCHHH
YLKGVIPNEMPASWSLEALKAQTVAARTYSITKTGTTVPDTTAFQVYGGYSWNSNTNKAV
HHHCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHH
EQTKGKVLKYNGSLITAAYSSSNGGYTEASNEVWSSSVPYLIAKKDTKDPQIGWTLTLSK
HHHCCCEEEECCCEEEEEEECCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCEEEEEECH
QQLDTKSLDLTKPSSWWSSATETDSARLSGVKNWILKNKETSADSVKIASIDDLSFSGTT
HHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC
QGQRAKTASMKVKYFVKSSTGSYNLSKITTISVPTSELRTMIGATVFKSTYVTVKKDTSK
CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHHEEEEEEEECCCE
YTISGKGYGHGIGMSQYGAKARAEAGDSYSSILKFYYPGTTLTSY
EEEECCCCCCCCCHHHCCCCHHHCCCCCHHHHHEEEECCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1357079; 1356138; 9384377