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The map label for this gene is yvaF

Identifier: 16080411

GI number: 16080411

Start: 3449049

End: 3449621

Strand: Reverse

Name: yvaF

Synonym: BSU33580

Alternate gene names: 16080411

Gene position: 3449621-3449049 (Counterclockwise)

Preceding gene: 16080412

Following gene: 16080410

Centisome position: 81.83

GC content: 40.66

Gene sequence:

>573_bases
ATGGATAAAAGAATTCTGGCGGAAACCTTCCGGCTGATCAAGCAGAAAGGATTTTCATTTACGATGAATGATTTGGCGGC
AGCGCTGGGAACGAGCAAGCGGACGCTCTATGCATATTATTCATCTAAAGATCAGCTTGTTGAGGCGGTTGTCGAACAAT
TTATAGCTGAAATGAAGCAAATAGAAAGAGACATCTATGAAAATGAAAGTTTAAATGTGCTCGAAAAGGTGAAACAAATG
CTGATCAGCCTTCCGCAGGGGATGGAACTGCTGAACATGGGATTATTAAATGAACTAAAGAAATACCATTACGATGCGTG
GCTTACATTAGACGCGTTTATTAAGGAAGAATGGGCGATTGTCCTAGCATTATTAAATGAGTGCAAACAGCAAAAGAGAA
TCAGAAACATCAATCCGGACCTGTTTGTTCACATGTATATAGGGAGCATCAATCAAGTGTATGACCCTGAATATCCGCTG
AAACATCAGTTCACGACAGGAGAGGTACTTGAATCAATTGTAGATGTTTTGTTTAACGGTATAACAGCTGATGAGGAGGC
TGATGCCACATGA

Upstream 100 bases:

>100_bases
ATAGGAGAGGTTTTTTTATATATTGTTGATTTCCATAAATTTCTGCCGTATAATATTGGTACCGAAATAGTTTTCTTGGT
ACCGAAAGCGGGGGATTAAT

Downstream 100 bases:

>100_bases
ATTGGGTGTTTCTATGCTTGGCGATTTTGTTTGAGGTTGCGGGAACTGTCAGCATGAAGCTATCGTCTGGTTTTACAAAG
CTTATTCCCAGTTTGCTGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDKRILAETFRLIKQKGFSFTMNDLAAALGTSKRTLYAYYSSKDQLVEAVVEQFIAEMKQIERDIYENESLNVLEKVKQM
LISLPQGMELLNMGLLNELKKYHYDAWLTLDAFIKEEWAIVLALLNECKQQKRIRNINPDLFVHMYIGSINQVYDPEYPL
KHQFTTGEVLESIVDVLFNGITADEEADAT

Sequences:

>Translated_190_residues
MDKRILAETFRLIKQKGFSFTMNDLAAALGTSKRTLYAYYSSKDQLVEAVVEQFIAEMKQIERDIYENESLNVLEKVKQM
LISLPQGMELLNMGLLNELKKYHYDAWLTLDAFIKEEWAIVLALLNECKQQKRIRNINPDLFVHMYIGSINQVYDPEYPL
KHQFTTGEVLESIVDVLFNGITADEEADAT
>Mature_190_residues
MDKRILAETFRLIKQKGFSFTMNDLAAALGTSKRTLYAYYSSKDQLVEAVVEQFIAEMKQIERDIYENESLNVLEKVKQM
LISLPQGMELLNMGLLNELKKYHYDAWLTLDAFIKEEWAIVLALLNECKQQKRIRNINPDLFVHMYIGSINQVYDPEYPL
KHQFTTGEVLESIVDVLFNGITADEEADAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVAF_BACSU (O32228)

Other databases:

- EMBL:   AL009126
- PIR:   D70027
- RefSeq:   NP_391238.1
- ProteinModelPortal:   O32228
- SMR:   O32228
- EnsemblBacteria:   EBBACT00000002223
- GeneID:   936128
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33580
- NMPDR:   fig|224308.1.peg.3364
- GenoList:   BSU33580
- GeneTree:   EBGT00050000000406
- HOGENOM:   HBG339826
- OMA:   LESIMDM
- ProtClustDB:   CLSK561336
- BioCyc:   BSUB:BSU33580-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.10.60
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 21994; Mature: 21994

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRILAETFRLIKQKGFSFTMNDLAAALGTSKRTLYAYYSSKDQLVEAVVEQFIAEMKQ
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
IERDIYENESLNVLEKVKQMLISLPQGMELLNMGLLNELKKYHYDAWLTLDAFIKEEWAI
HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLALLNECKQQKRIRNINPDLFVHMYIGSINQVYDPEYPLKHQFTTGEVLESIVDVLFNG
HHHHHHHHHHHHHHHCCCCHHEEHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
ITADEEADAT
CCCCCCCCCC
>Mature Secondary Structure
MDKRILAETFRLIKQKGFSFTMNDLAAALGTSKRTLYAYYSSKDQLVEAVVEQFIAEMKQ
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
IERDIYENESLNVLEKVKQMLISLPQGMELLNMGLLNELKKYHYDAWLTLDAFIKEEWAI
HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLALLNECKQQKRIRNINPDLFVHMYIGSINQVYDPEYPLKHQFTTGEVLESIVDVLFNG
HHHHHHHHHHHHHHHCCCCHHEEHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
ITADEEADAT
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377