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The map label for this gene is liaF

Identifier: 16080363

GI number: 16080363

Start: 3396114

End: 3396839

Strand: Reverse

Name: liaF

Synonym: BSU33100

Alternate gene names: 16080363

Gene position: 3396839-3396114 (Counterclockwise)

Preceding gene: 255767755

Following gene: 16080362

Centisome position: 80.58

GC content: 41.74

Gene sequence:

>726_bases
ATGACAAAAAAACAGCTTCTCGGATTGATCATTGCTTTATTCGGCATCAGTATGTTTTTGCAAATTATCGGAATAGGCGA
TCTGCTGTTTTGGCCGCTCTTTTTTCTGATTGCCGGCTATTTCCTTAAAAAATATTCCCGTGATTGGCTTGGCTCCGTCA
TGTATATCTTTGCCGCGTTTCTATTTTTGAAAAACCTCTTCAGCATCACCTTTAATTTATTCGGCTATGCGTTTGCCGCA
TTTCTGATTTACGCCGGCTACAGGCTTATCAAAGGGAAGCCGATATTTGAACCGAATGAGAAACAGGTCAATCTCAATAA
AAAAGAACATCATGAGCCGCCAAAAGATGTAAAACATCCCGACATGCGCAGCTTTTTTATCGGTGAGCTGCAAATGATGA
AGCAGCCGTTTGACCTGAACGATTTAAATGTCTCTGGTTTTATCGGTGATATCAAAATCGATTTATCTAAAGCGATGATT
CCCGAGGGAGAAAGTACAATCGTCATTAGCGGAGTCATTGGTAACGTTGATATTTATGTACCATCGGACCTTGAAGTGGC
TGTCAGCTCGGCTGTTTTTATAGGAGACATTAATCTGATCGGCTCGAAGAAAAGCGGATTAAGCACGAAGGTATATGCCG
CGTCAACTGATTTTAGCGAGTCAAAGCGCCGGGTAAAAGTGTCCGTTTCCTTATTTATCGGTGATGTGGATGTGAAGTAC
GTATGA

Upstream 100 bases:

>100_bases
CACGCAAGGAAGCGGCCGGCATCCAATCGACATCAAAACGGACAGCGGGGATCTAGCGATACGGTAGCACTAGGCAGAAG
AAAGGAGGCGGACACCAGGA

Downstream 100 bases:

>100_bases
GAAAAAAAATGCTTGCCAGCCTCCAATGGCGCGCCATCCGCATGACAACGGGAATCAGCCTGCTCCTTTTTGTTTGCCTG
ATTTCCTTTATGATGTTTTA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTKKQLLGLIIALFGISMFLQIIGIGDLLFWPLFFLIAGYFLKKYSRDWLGSVMYIFAAFLFLKNLFSITFNLFGYAFAA
FLIYAGYRLIKGKPIFEPNEKQVNLNKKEHHEPPKDVKHPDMRSFFIGELQMMKQPFDLNDLNVSGFIGDIKIDLSKAMI
PEGESTIVISGVIGNVDIYVPSDLEVAVSSAVFIGDINLIGSKKSGLSTKVYAASTDFSESKRRVKVSVSLFIGDVDVKY
V

Sequences:

>Translated_241_residues
MTKKQLLGLIIALFGISMFLQIIGIGDLLFWPLFFLIAGYFLKKYSRDWLGSVMYIFAAFLFLKNLFSITFNLFGYAFAA
FLIYAGYRLIKGKPIFEPNEKQVNLNKKEHHEPPKDVKHPDMRSFFIGELQMMKQPFDLNDLNVSGFIGDIKIDLSKAMI
PEGESTIVISGVIGNVDIYVPSDLEVAVSSAVFIGDINLIGSKKSGLSTKVYAASTDFSESKRRVKVSVSLFIGDVDVKY
V
>Mature_240_residues
TKKQLLGLIIALFGISMFLQIIGIGDLLFWPLFFLIAGYFLKKYSRDWLGSVMYIFAAFLFLKNLFSITFNLFGYAFAAF
LIYAGYRLIKGKPIFEPNEKQVNLNKKEHHEPPKDVKHPDMRSFFIGELQMMKQPFDLNDLNVSGFIGDIKIDLSKAMIP
EGESTIVISGVIGNVDIYVPSDLEVAVSSAVFIGDINLIGSKKSGLSTKVYAASTDFSESKRRVKVSVSLFIGDVDVKYV

Specific function: Unknown

COG id: COG4758

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LIAF_BACSU (O32199)

Other databases:

- EMBL:   AJ223978
- EMBL:   AL009126
- PIR:   G70045
- RefSeq:   NP_391190.1
- ProteinModelPortal:   O32199
- EnsemblBacteria:   EBBACT00000002221
- GeneID:   938469
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33100
- NMPDR:   fig|224308.1.peg.3316
- GenoList:   BSU33100
- GeneTree:   EBGT00050000002894
- HOGENOM:   HBG339080
- OMA:   GFIGDVK
- ProtClustDB:   CLSK872959
- BioCyc:   BSUB:BSU33100-MONOMER
- InterPro:   IPR016975
- PIRSF:   PIRSF031509

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27025; Mature: 26894

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x122a53d0)-; HASH(0x11eabe88)-; HASH(0x1068f690)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKQLLGLIIALFGISMFLQIIGIGDLLFWPLFFLIAGYFLKKYSRDWLGSVMYIFAAF
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLKNLFSITFNLFGYAFAAFLIYAGYRLIKGKPIFEPNEKQVNLNKKEHHEPPKDVKHP
HHHHHHHHHHHHHHHHHHHHHHHHHCHHEECCCCCCCCCCCEECCCHHHCCCCCCCCCCC
DMRSFFIGELQMMKQPFDLNDLNVSGFIGDIKIDLSKAMIPEGESTIVISGVIGNVDIYV
CHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCEEEEEEEECCEEEEE
PSDLEVAVSSAVFIGDINLIGSKKSGLSTKVYAASTDFSESKRRVKVSVSLFIGDVDVKY
CCCHHHHHHCEEEEEEEEEECCCCCCCCEEEEEECCCCHHCCCEEEEEEEEEEECEEEEE
V
H
>Mature Secondary Structure 
TKKQLLGLIIALFGISMFLQIIGIGDLLFWPLFFLIAGYFLKKYSRDWLGSVMYIFAAF
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLKNLFSITFNLFGYAFAAFLIYAGYRLIKGKPIFEPNEKQVNLNKKEHHEPPKDVKHP
HHHHHHHHHHHHHHHHHHHHHHHHHCHHEECCCCCCCCCCCEECCCHHHCCCCCCCCCCC
DMRSFFIGELQMMKQPFDLNDLNVSGFIGDIKIDLSKAMIPEGESTIVISGVIGNVDIYV
CHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCEEEEEEEECCEEEEE
PSDLEVAVSSAVFIGDINLIGSKKSGLSTKVYAASTDFSESKRRVKVSVSLFIGDVDVKY
CCCHHHHHHCEEEEEEEEEECCCCCCCCEEEEEECCCCHHCCCEEEEEEEEEEECEEEEE
V
H

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695