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The map label for this gene is fadM

Identifier: 16080337

GI number: 16080337

Start: 3372740

End: 3373648

Strand: Reverse

Name: fadM

Synonym: BSU32850

Alternate gene names: 16080337

Gene position: 3373648-3372740 (Counterclockwise)

Preceding gene: 16080341

Following gene: 16080336

Centisome position: 80.03

GC content: 44.99

Gene sequence:

>909_bases
ATGTTGAGACATGTGTTTTTATTCTTATCTCAAAATAAAACACTTACCAAGTTCGCAAAAGCATACGGAACGCGGCTTGG
AGCACGAAGGTTTGTCGCAGGGGATACGATTGAATCGGCGGTTAAGACCGTCAAAAGGCTAAACAGATCCGGTTTGTGTG
CAACAATTGATTATTTAGGCGAGTATGCAGCTTCGGAAAAAGAAGCAAACCAAGTCGCAGAGGAATGCAAGAAAGCCATT
CAAGCCATTGCCGAACATCAATTGAATTCAGAGCTTTCACTTAAGCTGACCTCAATCGGGCTCGATCTTTCAGAAGAACT
TGCTCTTACTCATTTGCGCGCCATTCTTTCCGTTGCGAAGCAATATGATGTTGCTGTGACCATTGATATGGAAGACTATT
CTCATTATGAACAGACACTTTCTATTTACAGGCAATGCAAACAGGAATTTGAGAAGCTCGGCACGGTCATTCAGGCGTAT
TTGTACCGGGCGGCAGAAGATATCAGAAAGATGCGGGACTTAAAGCCGAATCTCAGACTTGTAAAAGGCGCTTATAAAGA
ATCTGCGGCTGTAGCGTTTCCCGACAAAAGAGGCACGGACCTTCATTTTCAGAGCTTAATAAAGCTGCAGTTGTTAAGCG
GGAACTACACGGCTGTCGCCACACATGACGATGACATCATTGCATTTACGAAACAGCTCGTCGCCGAACATCAAATCCCC
GCATCGCAATTTGAGTTTCAAATGCTATACGGCATCAGGCCGGAGCGTCAGAAGGAACTCGCCAAGGAAGGCTACAGAAT
GCGTGTGTATGTCCCATATGGAACGGACTGGTTCAGCTACTTTATGAGAAGAATTGCCGAACGGCCTGCCAATGCAGCGT
TTGTGTTAAAAGGAATTTTGAAAAAGTGA

Upstream 100 bases:

>100_bases
ATCCATTGTGATCCTCCTTTGGTTTCTGTTCATTTTATAGTTTCCTTCAGACTGGGAGTTATATACAGGTGTTTTGAAGA
TGACGGCGGGAGGGAGTCGG

Downstream 100 bases:

>100_bases
AAGCAGCCGTGGGAAGCAGCTGCATTATGATTGTCCCATGTTATGTTTTTTATACTGCTGATTTTGACTTGTCCGTTTTC
CGCCGCCGTAATGCTGAGTC

Product: oxidoreductase involved in fatty acids degradation

Products: NA

Alternate protein names: PRODH 1; Proline oxidase 1 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MLRHVFLFLSQNKTLTKFAKAYGTRLGARRFVAGDTIESAVKTVKRLNRSGLCATIDYLGEYAASEKEANQVAEECKKAI
QAIAEHQLNSELSLKLTSIGLDLSEELALTHLRAILSVAKQYDVAVTIDMEDYSHYEQTLSIYRQCKQEFEKLGTVIQAY
LYRAAEDIRKMRDLKPNLRLVKGAYKESAAVAFPDKRGTDLHFQSLIKLQLLSGNYTAVATHDDDIIAFTKQLVAEHQIP
ASQFEFQMLYGIRPERQKELAKEGYRMRVYVPYGTDWFSYFMRRIAERPANAAFVLKGILKK

Sequences:

>Translated_302_residues
MLRHVFLFLSQNKTLTKFAKAYGTRLGARRFVAGDTIESAVKTVKRLNRSGLCATIDYLGEYAASEKEANQVAEECKKAI
QAIAEHQLNSELSLKLTSIGLDLSEELALTHLRAILSVAKQYDVAVTIDMEDYSHYEQTLSIYRQCKQEFEKLGTVIQAY
LYRAAEDIRKMRDLKPNLRLVKGAYKESAAVAFPDKRGTDLHFQSLIKLQLLSGNYTAVATHDDDIIAFTKQLVAEHQIP
ASQFEFQMLYGIRPERQKELAKEGYRMRVYVPYGTDWFSYFMRRIAERPANAAFVLKGILKK
>Mature_302_residues
MLRHVFLFLSQNKTLTKFAKAYGTRLGARRFVAGDTIESAVKTVKRLNRSGLCATIDYLGEYAASEKEANQVAEECKKAI
QAIAEHQLNSELSLKLTSIGLDLSEELALTHLRAILSVAKQYDVAVTIDMEDYSHYEQTLSIYRQCKQEFEKLGTVIQAY
LYRAAEDIRKMRDLKPNLRLVKGAYKESAAVAFPDKRGTDLHFQSLIKLQLLSGNYTAVATHDDDIIAFTKQLVAEHQIP
ASQFEFQMLYGIRPERQKELAKEGYRMRVYVPYGTDWFSYFMRRIAERPANAAFVLKGILKK

Specific function: Catalyzes the oxidation of L-proline to delta-1- pyrroline-5-carboxylate (P5C) [H]

COG id: COG0506

COG function: function code E; Proline dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline oxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787250, Length=317, Percent_Identity=29.0220820189274, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015590
- InterPro:   IPR002872
- InterPro:   IPR008219 [H]

Pfam domain/function: PF01619 Pro_dh [H]

EC number: =1.5.99.8 [H]

Molecular weight: Translated: 34452; Mature: 34452

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRHVFLFLSQNKTLTKFAKAYGTRLGARRFVAGDTIESAVKTVKRLNRSGLCATIDYLG
CCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
EYAASEKEANQVAEECKKAIQAIAEHQLNSELSLKLTSIGLDLSEELALTHLRAILSVAK
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
QYDVAVTIDMEDYSHYEQTLSIYRQCKQEFEKLGTVIQAYLYRAAEDIRKMRDLKPNLRL
HCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VKGAYKESAAVAFPDKRGTDLHFQSLIKLQLLSGNYTAVATHDDDIIAFTKQLVAEHQIP
HHHHHHCCCEEECCCCCCCCHHHHHHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHCCC
ASQFEFQMLYGIRPERQKELAKEGYRMRVYVPYGTDWFSYFMRRIAERPANAAFVLKGIL
HHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH
KK
CC
>Mature Secondary Structure
MLRHVFLFLSQNKTLTKFAKAYGTRLGARRFVAGDTIESAVKTVKRLNRSGLCATIDYLG
CCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
EYAASEKEANQVAEECKKAIQAIAEHQLNSELSLKLTSIGLDLSEELALTHLRAILSVAK
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
QYDVAVTIDMEDYSHYEQTLSIYRQCKQEFEKLGTVIQAYLYRAAEDIRKMRDLKPNLRL
HCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VKGAYKESAAVAFPDKRGTDLHFQSLIKLQLLSGNYTAVATHDDDIIAFTKQLVAEHQIP
HHHHHHCCCEEECCCCCCCCHHHHHHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHCCC
ASQFEFQMLYGIRPERQKELAKEGYRMRVYVPYGTDWFSYFMRRIAERPANAAFVLKGIL
HHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH
KK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA