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The map label for this gene is yurH

Identifier: 16080306

GI number: 16080306

Start: 3342433

End: 3343671

Strand: Reverse

Name: yurH

Synonym: BSU32530

Alternate gene names: 16080306

Gene position: 3343671-3342433 (Counterclockwise)

Preceding gene: 16080308

Following gene: 16080305

Centisome position: 79.32

GC content: 51.01

Gene sequence:

>1239_bases
ATGGAAAAGCAGAAGCTTTCAGTAAAAAACAGCATCACAGATTATATTGAATGGCTCGCCCAATACGGTGCGTCTGCGGA
TGGCGGCGTAACGAGGCTTTTATACACAAAAGAGTGGATGGACGCACAGCTTGCTGTGAAAACGGAAATGTCTTCTTTCG
GGCTTGAAACAAGATTCGACGATGTCGGCAATGTGTTTGGAAGGCTTTCGGGCACCCAGTCTCCGGATGAAGTCATTGTA
ACCGGTTCACATATCGATACTGTCATCAATGGAGGAAAATACGACGGCGCCTATGGCGTTCTGGCGGCAATGCTCGCGTT
AAAGCAGCTCAAGGAAACATACGGAGCGCCAAAAAAAACGCTCGAGGCGGTCTCCTTATGTGAGGAGGAAGGCAGCCGTT
TTCCAATGACCTATTGGGGGTCGGGGAATATGACGGGTGTTTTTTCAGAACAAGATGCAAAAGAGCCAAGAGACGAGTCG
GGAGTCTCCCTCCAAACAGCGATGCATGAGAGCGGTTTTGGCAAAGGTGTGTTTCAGTCAGCATATAGGACAGATATCAG
CGCGTTTGTTGAGCTGCATATTGAACAGGGGAAGACGTTGGAAATGTCAGGCCGGGATCTCGGCATCGTGACAAGTATTG
CGGGGCAGAGACGATATCTCGTCACGCTCGAAGGAGAATGCAATCACGCAGGAACCACCTCCATGAAATGGCGCAAGGAC
CCGCTCGCAGCCAGCAGCCGTATCATTCATGAGCTGCTGCTGCGGTCGGATGAGCTGCCGGATGAGCTCCGTCTGACATG
CGGAAAAATAACGGCAGAGCCCAATGTAGCCAATGTCATACCGGGCCGCGTCCAGTTTTCAATCGATATTCGCCATCAGC
ATCAGCATGTGCTGGAACAGTTTCATCAAGACATGGTTGCTTTGATCAACGGCATTTGCCTACAAAAAGGAATTCGCGCT
GTGATTGATGAATATATGCGGATAGAGCCTGTGCCGATGGACGAAAGGCTGAAGGCTGCGGCTTTTGAAACAGCATTAGA
AAACGGCTTCAGCTGTGAGGAAATGGTGAGCGGAGCAGGGCATGACGCGCAAATGATCGGAAGGCGCTATCCTGCTTGTA
TGCTGTTTGTGCCGAGCCGAGGCGGCGTCAGCCACTCACCGAAGGAATATACGTCAGCCAGACAGCTTGAGATCGGCGTC
CGCGCACTGACTGATTTATTATACAAACTGGCTTACTGA

Upstream 100 bases:

>100_bases
TGTGGCTAAAAAATAAACGTTTTTTTGGTTAATCTGTCAATGAACTATCATGTTGCTCCTTCTATAATGAAGTCACCATA
GCGGCCAGAGGGGGGAGTAC

Downstream 100 bases:

>100_bases
TAAAGGAGGAATGGCTGTGTCAGGCAGAAGAGAATTATGCACCCCGTTAAGAACGATTATGACACCGGGGCCTGTTGAGG
TTGATCCGCGTGTATTAAGA

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: Allantoate deiminase

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MEKQKLSVKNSITDYIEWLAQYGASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFDDVGNVFGRLSGTQSPDEVIV
TGSHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKTLEAVSLCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDES
GVSLQTAMHESGFGKGVFQSAYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKD
PLAASSRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQFHQDMVALINGICLQKGIRA
VIDEYMRIEPVPMDERLKAAAFETALENGFSCEEMVSGAGHDAQMIGRRYPACMLFVPSRGGVSHSPKEYTSARQLEIGV
RALTDLLYKLAY

Sequences:

>Translated_412_residues
MEKQKLSVKNSITDYIEWLAQYGASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFDDVGNVFGRLSGTQSPDEVIV
TGSHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKTLEAVSLCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDES
GVSLQTAMHESGFGKGVFQSAYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKD
PLAASSRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQFHQDMVALINGICLQKGIRA
VIDEYMRIEPVPMDERLKAAAFETALENGFSCEEMVSGAGHDAQMIGRRYPACMLFVPSRGGVSHSPKEYTSARQLEIGV
RALTDLLYKLAY
>Mature_412_residues
MEKQKLSVKNSITDYIEWLAQYGASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFDDVGNVFGRLSGTQSPDEVIV
TGSHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKTLEAVSLCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDES
GVSLQTAMHESGFGKGVFQSAYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKD
PLAASSRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQFHQDMVALINGICLQKGIRA
VIDEYMRIEPVPMDERLKAAAFETALENGFSCEEMVSGAGHDAQMIGRRYPACMLFVPSRGGVSHSPKEYTSARQLEIGV
RALTDLLYKLAY

Specific function: Involved in the anaerobic utilization of allantoin. Converts allantoate to (S)-ureidoglycolate and ammonia

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family

Homologues:

Organism=Escherichia coli, GI1786726, Length=404, Percent_Identity=47.2772277227723, Blast_Score=388, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALLC_BACSU (O32149)

Other databases:

- EMBL:   AL009126
- PIR:   G70017
- RefSeq:   NP_391133.1
- ProteinModelPortal:   O32149
- SMR:   O32149
- EnsemblBacteria:   EBBACT00000000829
- GeneID:   936699
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32530
- NMPDR:   fig|224308.1.peg.3259
- GenoList:   BSU32530
- GeneTree:   EBGT00050000002601
- HOGENOM:   HBG583284
- OMA:   IGAETGC
- PhylomeDB:   O32149
- ProtClustDB:   PRK09290
- BioCyc:   BSUB:BSU32530-MONOMER
- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650
- PIRSF:   PIRSF001235
- TIGRFAMs:   TIGR01879

Pfam domain/function: PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer

EC number: 3.5.3.-

Molecular weight: Translated: 45520; Mature: 45520

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQKLSVKNSITDYIEWLAQYGASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCCHHH
DVGNVFGRLSGTQSPDEVIVTGSHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKT
HHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
LEAVSLCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDESGVSLQTAMHESGFGKGVFQS
HHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH
AYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKD
HHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
PLAASSRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQ
CHHHHHHHHHHHHHCCCCCCHHHHHHHHCEECCCCCCCCCCCEEEEEEEECHHHHHHHHH
FHQDMVALINGICLQKGIRAVIDEYMRIEPVPMDERLKAAAFETALENGFSCEEMVSGAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCC
HDAQMIGRRYPACMLFVPSRGGVSHSPKEYTSARQLEIGVRALTDLLYKLAY
CCHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKQKLSVKNSITDYIEWLAQYGASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHCCCCCHHH
DVGNVFGRLSGTQSPDEVIVTGSHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKT
HHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
LEAVSLCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDESGVSLQTAMHESGFGKGVFQS
HHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH
AYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKD
HHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
PLAASSRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQHQHVLEQ
CHHHHHHHHHHHHHCCCCCCHHHHHHHHCEECCCCCCCCCCCEEEEEEEECHHHHHHHHH
FHQDMVALINGICLQKGIRAVIDEYMRIEPVPMDERLKAAAFETALENGFSCEEMVSGAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCC
HDAQMIGRRYPACMLFVPSRGGVSHSPKEYTSARQLEIGVRALTDLLYKLAY
CCHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 11344136