Click here to switch to the map view.

The map label for this gene is yunC

Identifier: 16080289

GI number: 16080289

Start: 3323300

End: 3323605

Strand: Reverse

Name: yunC

Synonym: BSU32360

Alternate gene names: 16080289

Gene position: 3323605-3323300 (Counterclockwise)

Preceding gene: 16080290

Following gene: 16080288

Centisome position: 78.84

GC content: 49.67

Gene sequence:

>306_bases
GTGGTAAACCTGACACCGATCATGATAGAAGGACAGCCTTTTACAGCTGTGACAGTAAAGCTTCCCAAAACGAATTTTAT
GGCCGTCGCCAATGATCACGGATACATTATGTGCGGCGCGCTTGATGTGGCGCTGCTGAATGAAAAATTAAAGGAGCGCG
GCATCGTGGCGGGACGCGCAGTTGGTGTCCGCACCATTGACCAGCTGTTAGACGCACCTTTAGAATCCGTCACGTACGCT
GCGGAAGATCTTGGCATCAAAGTCGGCATGAGCGGCAGAGAAGCGCTTTTAAAAATGATGAAATAA

Upstream 100 bases:

>100_bases
TTGCGGGATCTGCTTGCTTGGAAGCTTGCACAATAAGGCAGTCAGCCCACAACAAGCTGTGCCCTTCATCATAAAGTGAT
GAATGAAGGGAGTGGTTGAC

Downstream 100 bases:

>100_bases
AATAAATTGGCCCCGGCTATTACTATGTCCCCTCTTACAAGCATACATTGTGATATGTAAGGGGGGATTTTCTTGCCAAG
ATATCGCGGCCCTTTTCGCA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MVNLTPIMIEGQPFTAVTVKLPKTNFMAVANDHGYIMCGALDVALLNEKLKERGIVAGRAVGVRTIDQLLDAPLESVTYA
AEDLGIKVGMSGREALLKMMK

Sequences:

>Translated_101_residues
MVNLTPIMIEGQPFTAVTVKLPKTNFMAVANDHGYIMCGALDVALLNEKLKERGIVAGRAVGVRTIDQLLDAPLESVTYA
AEDLGIKVGMSGREALLKMMK
>Mature_101_residues
MVNLTPIMIEGQPFTAVTVKLPKTNFMAVANDHGYIMCGALDVALLNEKLKERGIVAGRAVGVRTIDQLLDAPLESVTYA
AEDLGIKVGMSGREALLKMMK

Specific function: Unknown

COG id: COG3377

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUNC_BACSU (O32132)

Other databases:

- EMBL:   AL009126
- PIR:   F70015
- RefSeq:   NP_391116.1
- ProteinModelPortal:   O32132
- SMR:   O32132
- EnsemblBacteria:   EBBACT00000003121
- GeneID:   936679
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32360
- NMPDR:   fig|224308.1.peg.3242
- GenoList:   BSU32360
- GeneTree:   EBGT00050000004237
- HOGENOM:   HBG734168
- OMA:   KTNFMAV
- ProtClustDB:   CLSK873618
- BioCyc:   BSUB:BSU32360-MONOMER
- InterPro:   IPR014931

Pfam domain/function: PF08827 DUF1805; SSF102891 DUF1805

EC number: NA

Molecular weight: Translated: 10875; Mature: 10875

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLTPIMIEGQPFTAVTVKLPKTNFMAVANDHGYIMCGALDVALLNEKLKERGIVAGRA
CCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCH
VGVRTIDQLLDAPLESVTYAAEDLGIKVGMSGREALLKMMK
HHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCHHHHHHHCC
>Mature Secondary Structure
MVNLTPIMIEGQPFTAVTVKLPKTNFMAVANDHGYIMCGALDVALLNEKLKERGIVAGRA
CCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCH
VGVRTIDQLLDAPLESVTYAAEDLGIKVGMSGREALLKMMK
HHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377