Click here to switch to the map view.

The map label for this gene is ytkC

Identifier: 16080116

GI number: 16080116

Start: 3135668

End: 3136072

Strand: Reverse

Name: ytkC

Synonym: BSU30640

Alternate gene names: 16080116

Gene position: 3136072-3135668 (Counterclockwise)

Preceding gene: 16080117

Following gene: 16080115

Centisome position: 74.39

GC content: 37.78

Gene sequence:

>405_bases
ATGGATAGAGACTTTGGCATCTTTTCGTTTTTAGCAGTCAGCGTTTCAGCAGCGGGTTTTTTCTTTGGAGGTTTTCAGTA
TTCATTTCTGATTTTGCTCTCTCTTATGGCAATTGAATTTATCAGTACGACTTTGAAGGAAACCATTATTCACAAACTGT
CATTTAAAAAGGTATTTGCCCGGCTTGTCAAAAAATTAGTCACGCTGGCTCTGATCTCTGTATGCCACTTTTTTGATCAG
CTGCTGAATACACAGGGATCAATTCGTGACTTGGCTATTATGTTTTATATTCTTTATGAATCTGTGCAAATTGTTGTGAC
AGCCAGCTCTCTTGGCATACCGGTTCCTCAGATGCTTGTCGATCTTTTAGAAACGTTAAAAAATAAATTTAAGCGCAAAC
CGTAA

Upstream 100 bases:

>100_bases
ATAGGCGACAACCAGTCCATTTTTCTGAAAAATCCAATCCGTTCGGCTTGTTTACCATAGAATATCGTAAGGCCGTTTCT
GTGAAAGGATGTTGGGATAA

Downstream 100 bases:

>100_bases
CTTTTCCCTGTTCGCGGGTCATAATAAAGCCCAGAGCGTCGGTCGCACTTTCCGGCAAAAGTATCGCAAAAAAACTGTAC
GAGCTAGTCTGCATGCAGAA

Product: autolytic amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MDRDFGIFSFLAVSVSAAGFFFGGFQYSFLILLSLMAIEFISTTLKETIIHKLSFKKVFARLVKKLVTLALISVCHFFDQ
LLNTQGSIRDLAIMFYILYESVQIVVTASSLGIPVPQMLVDLLETLKNKFKRKP

Sequences:

>Translated_134_residues
MDRDFGIFSFLAVSVSAAGFFFGGFQYSFLILLSLMAIEFISTTLKETIIHKLSFKKVFARLVKKLVTLALISVCHFFDQ
LLNTQGSIRDLAIMFYILYESVQIVVTASSLGIPVPQMLVDLLETLKNKFKRKP
>Mature_134_residues
MDRDFGIFSFLAVSVSAAGFFFGGFQYSFLILLSLMAIEFISTTLKETIIHKLSFKKVFARLVKKLVTLALISVCHFFDQ
LLNTQGSIRDLAIMFYILYESVQIVVTASSLGIPVPQMLVDLLETLKNKFKRKP

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTKC_BACSU (O34883)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   D69994
- RefSeq:   NP_390942.1
- EnsemblBacteria:   EBBACT00000003961
- GeneID:   937209
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30640
- NMPDR:   fig|224308.1.peg.3067
- GenoList:   BSU30640
- GeneTree:   EBGT00050000001834
- HOGENOM:   HBG338254
- OMA:   IMFYILY
- ProtClustDB:   CLSK887761
- BioCyc:   BSUB:BSU30640-MONOMER
- InterPro:   IPR006480
- TIGRFAMs:   TIGR01593

Pfam domain/function: PF05105 Phage_holin_4

EC number: NA

Molecular weight: Translated: 15151; Mature: 15151

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11bbe320)-; HASH(0x1143f4a8)-; HASH(0x10fde148)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRDFGIFSFLAVSVSAAGFFFGGFQYSFLILLSLMAIEFISTTLKETIIHKLSFKKVFA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLVKKLVTLALISVCHFFDQLLNTQGSIRDLAIMFYILYESVQIVVTASSLGIPVPQMLV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHH
DLLETLKNKFKRKP
HHHHHHHHHHCCCH
>Mature Secondary Structure
MDRDFGIFSFLAVSVSAAGFFFGGFQYSFLILLSLMAIEFISTTLKETIIHKLSFKKVFA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLVKKLVTLALISVCHFFDQLLNTQGSIRDLAIMFYILYESVQIVVTASSLGIPVPQMLV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHH
DLLETLKNKFKRKP
HHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377