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The map label for this gene is ytlI

Identifier: 16079992

GI number: 16079992

Start: 3008938

End: 3009864

Strand: Direct

Name: ytlI

Synonym: BSU29400

Alternate gene names: 16079992

Gene position: 3008938-3009864 (Clockwise)

Preceding gene: 16079978

Following gene: 16080006

Centisome position: 71.38

GC content: 42.83

Gene sequence:

>927_bases
TTGGAGTTACGCTCAATCAAAACGTTTCATACGATTGTAAAATTTGGAAGCTTCTATAAAGCTGCAGAAATACTCAACTA
CTCGCAGCCGACGATATCGATGCGTATGAAGCAATTGGAGCAGGATTTAGGCGTACTGCTGTTTGAAAGAGGAAAAAGCC
TGCAGTTGACAAAAGCAGGGAAGCTTTTTTATGAACGAACAGGAGATCTTTTGATGCAATACGAGGCGCTTAAACACAAC
CTCTCCGACTTAAAGGAAGAAGAGGCAGGCATTATCAACATAGGGGTTTCAGAGCCAACCGCCAGTCTGATATTCCCCGA
GATTTTAAAGGATTTCTTAATGGATTACCCAAAGATAACGGTTAATATCAAGGTTGATGACGCCAATACCTGCAGTCAAA
AGCTCTTAGACGGGACGATTGATTTTGCAGTCTGCGGCGAGCCGGAGCTGATTCTTGAAAATTACTACCATCCATTTTTT
TATGACACATTAAATGTGATTGTATCTGATCAACATCCGCTCGCTGAGAAGAAGGCTGTCCATTTGTCTGATTTAGCAGA
AGAGCGCTTCATATTTACGCCCGCCAATTGCCCCATTCGCTTACAAATTGAACAGCATTTACATAGAGAACTCGGGAATC
GCTACAAAAAAATGGAGCTCACAAGCAGCATGTCACATGAATATTACGTACGTGAAAACATCGGAATTTCAATCTTTACC
AGCACCGCACATTCTAAACCGTTCAACGGCACTAAAGTCATTCCAATTCTGAACCTGGATATCACCCCGCCCATAGGGCT
GTTGACAAATCAAAAAGAAGTTCATTTTGACCGCGCCACGAAGGACTTGATCGCCCGGATAACCAAACGTTTTCAGCAGC
GCAGCAAAGAATTGGAAGGAACCTCTGATAAGACCATTACAGGATAA

Upstream 100 bases:

>100_bases
TTATTGTTTATACTATAAAGCATACTCTGATCTTTGACTAATCAAAAAAAGTAAACCTTCACTTCAGTAATTTTAATGAT
GAAAAACAGGAGGGAGCACA

Downstream 100 bases:

>100_bases
CTGAAAAAATAAAAACCACCTCCTGATTCATCAGGAGATGGTTTCACGGTTTAAAGCTCGATCGTCTCACCGACCGACAT
GACTTTGCCGACTCCGCCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAGKLFYERTGDLLMQYEALKHN
LSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFF
YDTLNVIVSDQHPLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFT
STAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEGTSDKTITG

Sequences:

>Translated_308_residues
MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAGKLFYERTGDLLMQYEALKHN
LSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFF
YDTLNVIVSDQHPLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFT
STAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEGTSDKTITG
>Mature_308_residues
MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAGKLFYERTGDLLMQYEALKHN
LSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFF
YDTLNVIVSDQHPLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFT
STAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEGTSDKTITG

Specific function: Positively regulates the expression of ytmI operon in response to the availability of sulfur sources

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI157672245, Length=210, Percent_Identity=32.3809523809524, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI145693105, Length=279, Percent_Identity=28.3154121863799, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788481, Length=239, Percent_Identity=29.7071129707113, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787879, Length=283, Percent_Identity=26.5017667844523, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787530, Length=225, Percent_Identity=25.7777777777778, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790399, Length=196, Percent_Identity=26.0204081632653, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081904, Length=204, Percent_Identity=28.921568627451, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=28.2758620689655, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=25.2032520325203, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=212, Percent_Identity=26.8867924528302, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788887, Length=299, Percent_Identity=24.7491638795987, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=22.9838709677419, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=210, Percent_Identity=25.2380952380952, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082132, Length=270, Percent_Identity=24.4444444444444, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786508, Length=175, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790262, Length=216, Percent_Identity=24.0740740740741, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=30.327868852459, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787128, Length=153, Percent_Identity=27.4509803921569, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTLI_BACSU (O35038)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   E69995
- RefSeq:   NP_390818.1
- ProteinModelPortal:   O35038
- SMR:   O35038
- EnsemblBacteria:   EBBACT00000002867
- GeneID:   938452
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29400
- NMPDR:   fig|224308.1.peg.2943
- GenoList:   BSU29400
- GeneTree:   EBGT00050000000809
- HOGENOM:   HBG338319
- OMA:   PFFHDTL
- ProtClustDB:   CLSK887718
- BioCyc:   BSUB:BSU29400-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 35233; Mature: 35233

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEECCCCEEEEEHHH
KLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEE
VNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFFYDTLNVIVSDQHPLAEKKAV
EEEEECCCCHHHHHHHCCCCCEEECCCCHHHHHHCCCCHHHHHHHEEECCCCCCCHHHHH
HLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFT
HHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEE
STAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEG
CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSDKTITG
CCCCCCCC
>Mature Secondary Structure
MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEECCCCEEEEEHHH
KLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEE
VNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFFYDTLNVIVSDQHPLAEKKAV
EEEEECCCCHHHHHHHCCCCCEEECCCCHHHHHHCCCCHHHHHHHEEECCCCCCCHHHHH
HLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFT
HHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEE
STAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEG
CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSDKTITG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377