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The map label for this gene is ysdB

Identifier: 16079935

GI number: 16079935

Start: 2951490

End: 2951882

Strand: Direct

Name: ysdB

Synonym: BSU28830

Alternate gene names: 16079935

Gene position: 2951490-2951882 (Clockwise)

Preceding gene: 16079921

Following gene: 255767666

Centisome position: 70.01

GC content: 37.91

Gene sequence:

>393_bases
ATGTTTGTCATGGTTCTAAGGATTATTTTGCTTGCACTTTTTGCTTATTGTATTTATGCCGTGGTCAAATATGTCGCGAA
TCCTAAGAGAAGGCTTAAGCTGGCCCAATCAAAAGAACATTTTTATATTATTGATGAACAAAACAATACCCGGAAGAATT
TTCAGCTGACGTATAAAGGCGTGCTTTTTGAGGGAGAAAAGCATATTCCTTCCAAGGATCATCCGCTGTTTATTCACACG
ATCTTTGTCTGGACAGAATCTCCTGAGAAGCTGAAACATTTCTCTGCAAAAGATTTTGAGAACATTGAAGAAAAAGTGCT
GGAACGATATCCAAATTGTAAGATTGACTGGGACCAGCCCATTAAACTCGCAAAAAAAGCAGAAGAGCGTTAA

Upstream 100 bases:

>100_bases
GGTATATGTTTTTACAGCTTTCTTTTAGAAAAAGTGAAACCTTTTTCTATGCTTTTCGTATTACATCAGATCATCACCAT
AAGGGAGGTGCCTTCACACA

Downstream 100 bases:

>100_bases
ACGCTTTTCTGCTTTTTATAAATCAAACGGGCTGTAGTAAATAGCGATGAGAATCGCTTCTATTACCAGAAGAAGCGGTA
CTCCGTACTTAAAAGAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNTRKNFQLTYKGVLFEGEKHIPSKDHPLFIHT
IFVWTESPEKLKHFSAKDFENIEEKVLERYPNCKIDWDQPIKLAKKAEER

Sequences:

>Translated_130_residues
MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNTRKNFQLTYKGVLFEGEKHIPSKDHPLFIHT
IFVWTESPEKLKHFSAKDFENIEEKVLERYPNCKIDWDQPIKLAKKAEER
>Mature_130_residues
MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNTRKNFQLTYKGVLFEGEKHIPSKDHPLFIHT
IFVWTESPEKLKHFSAKDFENIEEKVLERYPNCKIDWDQPIKLAKKAEER

Specific function: May mediate a negative feedback loop that down-regulates the expression of the sigma-W regulon following the activation of sigma-W in response to conditions of cell envelope stress. Might interact with and inhibit the activity of the protease prsW, or cou

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSDB_BACSU (P94520)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   H69983
- RefSeq:   NP_390761.1
- EnsemblBacteria:   EBBACT00000000201
- GeneID:   937429
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28830
- NMPDR:   fig|224308.1.peg.2886
- GenoList:   BSU28830
- GeneTree:   EBGT00050000001699
- HOGENOM:   HBG338216
- OMA:   LFEGEKH
- ProtClustDB:   CLSK873516
- BioCyc:   BSUB:BSU28830-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15572; Mature: 15572

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x117f72e0)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNTRKNFQLTYKG
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEE
VLFEGEKHIPSKDHPLFIHTIFVWTESPEKLKHFSAKDFENIEEKVLERYPNCKIDWDQP
EEEECCCCCCCCCCCEEEEEEEEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCH
IKLAKKAEER
HHHHHHCCCH
>Mature Secondary Structure
MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNTRKNFQLTYKG
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEE
VLFEGEKHIPSKDHPLFIHTIFVWTESPEKLKHFSAKDFENIEEKVLERYPNCKIDWDQP
EEEECCCCCCCCCCCEEEEEEEEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCH
IKLAKKAEER
HHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377; 12207695