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The map label for this gene is yshB

Identifier: 16079912

GI number: 16079912

Start: 2925100

End: 2925633

Strand: Reverse

Name: yshB

Synonym: BSU28600

Alternate gene names: 16079912

Gene position: 2925633-2925100 (Counterclockwise)

Preceding gene: 16079913

Following gene: 16079911

Centisome position: 69.4

GC content: 43.82

Gene sequence:

>534_bases
ATGCTAGATATCATCATCTTAATCTTGCTCCTGATGGGGACTTTACTGGGGTTAAAACGCGGTTTTATCCTGCAGTTTAT
CCGCTTGACGAGCTTTATTTTATCAATTGCCTTTGCGGCTTTATTCTATAAAAACGTGGCACCGCATTTACATTGGATTC
CCGCACCCGATTTTTCAGCGGGACAGCCGGCTCTTTCTTTTTTTACGGGGAATTTGGAAGCAGCGTACTATAATGCGATT
GCGTTTATCGTTTTATTTATCATTGCTAAAATCTTACTGAGAATCATCGGCTCGTTCCTGAGTATTGTAGCCGGCATTCC
GGTGATTAAACAAATCAACCAGATGCTGGGAGCCGTTCTCGGTTTTCTAGAAGTCTATTTATTTACATTTGTGCTGCTGT
ATGTCGCATCCGTTCTGCCGGTAGACGCGTTGCAGCAAATGATGGGGCAATCGTCTCTCGCAAATGTGATCATTAACCAT
ACACCGTACTTGTCAGGGCTTTTACAAGAGCTGTGGACACAGTACGGGGCATAA

Upstream 100 bases:

>100_bases
TGCAGTGCTGACAGCGGTAAATGTGGTGCACGATTATGTCAAATTACAAGAGAAATGTGAAAAACTGGAGCGTCAGCTTA
AAGAAAAGGATTGAACAACT

Downstream 100 bases:

>100_bases
AAAAACTTCTCTTGTCCGGAGAAGTTTTTTTCAAGTATGATGGAAACATATGTGAACGTCTGGGGGTTATGATATGCATA
AAAAAGATATTATCCGGCTG

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MLDIIILILLLMGTLLGLKRGFILQFIRLTSFILSIAFAALFYKNVAPHLHWIPAPDFSAGQPALSFFTGNLEAAYYNAI
AFIVLFIIAKILLRIIGSFLSIVAGIPVIKQINQMLGAVLGFLEVYLFTFVLLYVASVLPVDALQQMMGQSSLANVIINH
TPYLSGLLQELWTQYGA

Sequences:

>Translated_177_residues
MLDIIILILLLMGTLLGLKRGFILQFIRLTSFILSIAFAALFYKNVAPHLHWIPAPDFSAGQPALSFFTGNLEAAYYNAI
AFIVLFIIAKILLRIIGSFLSIVAGIPVIKQINQMLGAVLGFLEVYLFTFVLLYVASVLPVDALQQMMGQSSLANVIINH
TPYLSGLLQELWTQYGA
>Mature_177_residues
MLDIIILILLLMGTLLGLKRGFILQFIRLTSFILSIAFAALFYKNVAPHLHWIPAPDFSAGQPALSFFTGNLEAAYYNAI
AFIVLFIIAKILLRIIGSFLSIVAGIPVIKQINQMLGAVLGFLEVYLFTFVLLYVASVLPVDALQQMMGQSSLANVIINH
TPYLSGLLQELWTQYGA

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSHB_BACSU (P94543)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   B69985
- RefSeq:   NP_390738.1
- ProteinModelPortal:   P94543
- EnsemblBacteria:   EBBACT00000001654
- GeneID:   937446
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28600
- NMPDR:   fig|224308.1.peg.2863
- GenoList:   BSU28600
- GeneTree:   EBGT00050000001578
- HOGENOM:   HBG697379
- OMA:   GFILQFI
- ProtClustDB:   CLSK2391281
- BioCyc:   BSUB:BSU28600-MONOMER
- InterPro:   IPR003825

Pfam domain/function: PF02674 Colicin_V

EC number: NA

Molecular weight: Translated: 19535; Mature: 19535

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1183bcd4)-; HASH(0x10d93c78)-; HASH(0x113ba0d0)-; HASH(0x118859cc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIIILILLLMGTLLGLKRGFILQFIRLTSFILSIAFAALFYKNVAPHLHWIPAPDFSA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCC
GQPALSFFTGNLEAAYYNAIAFIVLFIIAKILLRIIGSFLSIVAGIPVIKQINQMLGAVL
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
GFLEVYLFTFVLLYVASVLPVDALQQMMGQSSLANVIINHTPYLSGLLQELWTQYGA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MLDIIILILLLMGTLLGLKRGFILQFIRLTSFILSIAFAALFYKNVAPHLHWIPAPDFSA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCC
GQPALSFFTGNLEAAYYNAIAFIVLFIIAKILLRIIGSFLSIVAGIPVIKQINQMLGAVL
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
GFLEVYLFTFVLLYVASVLPVDALQQMMGQSSLANVIINHTPYLSGLLQELWTQYGA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377