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The map label for this gene is yrbC

Identifier: 16079834

GI number: 16079834

Start: 2843106

End: 2843828

Strand: Reverse

Name: yrbC

Synonym: BSU27820

Alternate gene names: 16079834

Gene position: 2843828-2843106 (Counterclockwise)

Preceding gene: 255767638

Following gene: 16079829

Centisome position: 67.46

GC content: 43.98

Gene sequence:

>723_bases
ATGGCAGGCCATTCCAAGTGGAAAAACATTCAAAAAAGAAAAAATGCACAGGATGCAAAGCGCGGGAAAATATTTATGAA
GCTGGCAAAAGAAATCTATGTGGCAGCGAAAGAAGGCGGAGCGGATCCAGAAGCAAATTCAGCATTGCGTCTTGTCATCG
AAAAAGCAAAAGGCGCCAATATGCCGAATGAAAATATAGATCGGGCCATTAAAAAAGCTGCGGGAGGCCAAGACGGAAGC
AGCTATGAAGAAATCACCTATGAAGGCTACGGCCCTTCAGGGATTGCCGTCATGGTTGAATGCGTAACAGATAATAAAAA
CCGAACGGCGTCAAATGTGCGGACAGCCTTTAATAAAAATGGCGGAAGTCTGGGAGAAAGCGGATGTGTAGCCTTTTTAT
TTGAACGAAAGGGGTTCATTACGATAGACCGTACTGAACGGCAAATAGAAGAAGATGAGCTCATGCTTGATGTGCTTGAA
GCAGGAGGAGAAGAGCTGCGAATTGAAGAAGACCTATATGAGGTTTTCACAGAGCCTGAGCATTTTGAAGAGGTGAAAAC
AGCCCTCGAATCGAAATATCTAATTTCTTCGGCGGAGGTGACCATGCTTCCCAATACCTATGCAGAAGCCGATGATCAGG
CTGTTGAGAAGCTGGAAACATTAATAGACGTCCTTGAAGATGACGATGATGTTCAAGAAGTGTATACAAACTATCGTTCA
TAA

Upstream 100 bases:

>100_bases
AGGAAGGGCTGCCGGAAGTGATATTCGGCAGCCTTTTTCTTTGCATCAGCGAACATTTCCCATTAAAGTGTACATAGAAA
ATGTAAAAGAAGGTGAAAAC

Downstream 100 bases:

>100_bases
AAAACCGGCACGAGGTCATATCGGGCCGGTTTTAGTATGTTCAGGAGACACGTTCACTTTCATGAGTGTATTCTTTCTCC
CAGAAATCAGCGTTTTTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRAIKKAAGGQDGS
SYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESGCVAFLFERKGFITIDRTERQIEEDELMLDVLE
AGGEELRIEEDLYEVFTEPEHFEEVKTALESKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEVYTNYRS

Sequences:

>Translated_240_residues
MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRAIKKAAGGQDGS
SYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESGCVAFLFERKGFITIDRTERQIEEDELMLDVLE
AGGEELRIEEDLYEVFTEPEHFEEVKTALESKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEVYTNYRS
>Mature_239_residues
AGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGANMPNENIDRAIKKAAGGQDGSS
YEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKNGGSLGESGCVAFLFERKGFITIDRTERQIEEDELMLDVLEA
GGEELRIEEDLYEVFTEPEHFEEVKTALESKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEVYTNYRS

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=245, Percent_Identity=29.3877551020408, Blast_Score=123, Evalue=1e-28,
Organism=Escherichia coli, GI1788171, Length=239, Percent_Identity=50.2092050209205, Blast_Score=232, Evalue=2e-62,
Organism=Escherichia coli, GI1788294, Length=236, Percent_Identity=40.6779661016949, Blast_Score=170, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI17556100, Length=243, Percent_Identity=27.5720164609054, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=34.9809885931559, Blast_Score=128, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=29.3650793650794, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRBC_BACSU (P94447)

Other databases:

- EMBL:   Y15896
- EMBL:   AL009126
- EMBL:   D50551
- PIR:   B69972
- RefSeq:   NP_390660.1
- ProteinModelPortal:   P94447
- SMR:   P94447
- EnsemblBacteria:   EBBACT00000002771
- GeneID:   937517
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27820
- NMPDR:   fig|224308.1.peg.2785
- GenoList:   BSU27820
- GeneTree:   EBGT00050000001263
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   P94447
- ProtClustDB:   PRK00110
- BioCyc:   BSUB:BSU27820-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26708; Mature: 26577

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
MPNENIDRAIKKAAGGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKN
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
GGSLGESGCVAFLFERKGFITIDRTERQIEEDELMLDVLEAGGEELRIEEDLYEVFTEPE
CCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCH
HFEEVKTALESKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEVYTNYRS
HHHHHHHHHHHHHHHCCCCEEECCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
AGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
MPNENIDRAIKKAAGGQDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFNKN
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
GGSLGESGCVAFLFERKGFITIDRTERQIEEDELMLDVLEAGGEELRIEEDLYEVFTEPE
CCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCH
HFEEVKTALESKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEVYTNYRS
HHHHHHHHHHHHHHHCCCCEEECCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9770294