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The map label for this gene is yrbE

Identifier: 16079829

GI number: 16079829

Start: 2838847

End: 2839872

Strand: Reverse

Name: yrbE

Synonym: BSU27770

Alternate gene names: 16079829

Gene position: 2839872-2838847 (Counterclockwise)

Preceding gene: 16079834

Following gene: 255767634

Centisome position: 67.37

GC content: 45.42

Gene sequence:

>1026_bases
ATGACAAAACAGATTGTGACAGGGATTATCGGTGCAGGCCGCATCGGCAAACTTCATGTTCAAAATATAAGCCGGATTCC
TCACATGAAAATAAAAGCAATCTCTGACATTCAGGCGAGCCGTATAAAAAGCTGGGCCGACAGTCATCAGATTGAATACA
TAACCTCTGATTATCGTGATTTATTACATGATCCTGATATTGATGCTATTTTTATTTGCTCTCCTACAGCCGTACATGCA
CAGATGATCAAAGAAGCAGCCGAGGCGAAAAAGCATATATTTTGTGAGAAGCCCGTTAGTTTCTCTCTGGACGAAACGAG
TGAAGCGCTTGCGGCTGTCCGGAAACACGGGGTAACACTTCAAGTCGGATTTAACCGCCGCTTTGATCCTCATTTTAAGA
AAATCAAAACGATTGTTGAAAATGGTGAAATCGGTACACCTCATTTATTAAAAATCACGTCCCGGGACCCAGAACCCCCG
AATATAGATTATGTCCGTACGTCAGGCGGATTGTTTATGGATATGTCGATCCATGATTTTGATATGGCCAGATATATTAT
GGGAAGCGAAGTGACGGAAGTGTATGCCAAAGGGGCGGCTTTGGTGAATCCTTCTTTTGCGGAGCTGGGTGATATTGATA
CAGCTGTTATTACACTGACTTTTGAAAACGGTGCCATGGCTGTGATTGATAACAGCCGCCAAGCTGTGTACGGATATGAC
CAGCGGGTTGAGGTTTTCGGGACGAAAGGCTCTGCAGCGGCTGACAATAGCAGGCCGACAACGGTTGAGGTGTCAACAGC
TGATTTTGTGATGAAGGATAAACCGCATTTCTTTTTCCTTGAACGCTATAAGGATTCATATGAGGAGGAGATTCTCCGTT
TTGCAGAAGCGATCGGCACAAACCAGGAGACTCCCTGCACCGGCAATGACGGTTTACAGGCCGGGAGGATCGCCAGAGCA
GCACAGCAATCGCTTGCTTTTGGCATGCCTGTTAGCATTGAGCACACTGAAAAAATCGCTTTTTAA

Upstream 100 bases:

>100_bases
ACATAGAACGTTTAATTTCCATTCTTGAAAAGCGCTTACAAATGGGATAGTATTAATTTTAAATAAAGCGCTTTCGTGAA
TGATCAAGGGGGAAGAAGCC

Downstream 100 bases:

>100_bases
TCTAACAGGATTACAATTCAGCAAGCTTGGGTATATACTCCATTGATACTTTAAGTAGGCGGTGGAGAAAATGAATACAG
TACATGCTAAAGGAAATGTT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MTKQIVTGIIGAGRIGKLHVQNISRIPHMKIKAISDIQASRIKSWADSHQIEYITSDYRDLLHDPDIDAIFICSPTAVHA
QMIKEAAEAKKHIFCEKPVSFSLDETSEALAAVRKHGVTLQVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPP
NIDYVRTSGGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPSFAELGDIDTAVITLTFENGAMAVIDNSRQAVYGYD
QRVEVFGTKGSAAADNSRPTTVEVSTADFVMKDKPHFFFLERYKDSYEEEILRFAEAIGTNQETPCTGNDGLQAGRIARA
AQQSLAFGMPVSIEHTEKIAF

Sequences:

>Translated_341_residues
MTKQIVTGIIGAGRIGKLHVQNISRIPHMKIKAISDIQASRIKSWADSHQIEYITSDYRDLLHDPDIDAIFICSPTAVHA
QMIKEAAEAKKHIFCEKPVSFSLDETSEALAAVRKHGVTLQVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPP
NIDYVRTSGGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPSFAELGDIDTAVITLTFENGAMAVIDNSRQAVYGYD
QRVEVFGTKGSAAADNSRPTTVEVSTADFVMKDKPHFFFLERYKDSYEEEILRFAEAIGTNQETPCTGNDGLQAGRIARA
AQQSLAFGMPVSIEHTEKIAF
>Mature_340_residues
TKQIVTGIIGAGRIGKLHVQNISRIPHMKIKAISDIQASRIKSWADSHQIEYITSDYRDLLHDPDIDAIFICSPTAVHAQ
MIKEAAEAKKHIFCEKPVSFSLDETSEALAAVRKHGVTLQVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPPN
IDYVRTSGGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPSFAELGDIDTAVITLTFENGAMAVIDNSRQAVYGYDQ
RVEVFGTKGSAAADNSRPTTVEVSTADFVMKDKPHFFFLERYKDSYEEEILRFAEAIGTNQETPCTGNDGLQAGRIARAA
QQSLAFGMPVSIEHTEKIAF

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family

Homologues:

Organism=Escherichia coli, GI87081947, Length=197, Percent_Identity=29.4416243654822, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787574, Length=241, Percent_Identity=25.3112033195021, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87082405, Length=256, Percent_Identity=23.828125, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789848, Length=145, Percent_Identity=29.6551724137931, Blast_Score=68, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24581117, Length=255, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRBE_BACSU (O05389)

Other databases:

- EMBL:   Y15896
- EMBL:   AL009126
- EMBL:   X93081
- PIR:   D69972
- RefSeq:   NP_390655.1
- ProteinModelPortal:   O05389
- SMR:   O05389
- EnsemblBacteria:   EBBACT00000002121
- GeneID:   936523
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27770
- NMPDR:   fig|224308.1.peg.2780
- GenoList:   BSU27770
- GeneTree:   EBGT00050000000829
- HOGENOM:   HBG612336
- OMA:   YTRPPLH
- PhylomeDB:   O05389
- ProtClustDB:   CLSK2752466
- BioCyc:   BSUB:BSU27770-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37788; Mature: 37657

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQIVTGIIGAGRIGKLHVQNISRIPHMKIKAISDIQASRIKSWADSHQIEYITSDYRD
CCHHHHHHHHCCCCCCEEEHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCEEEHHHHHHH
LLHDPDIDAIFICSPTAVHAQMIKEAAEAKKHIFCEKPVSFSLDETSEALAAVRKHGVTL
HHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCEE
QVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPPNIDYVRTSGGLFMDMSIHDF
EECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEEEEECHH
DMARYIMGSEVTEVYAKGAALVNPSFAELGDIDTAVITLTFENGAMAVIDNSRQAVYGYD
HHHHHHHCCHHHHHHHCCCEEECCCHHHHCCCCEEEEEEEECCCEEEEEECCCCEEECCC
QRVEVFGTKGSAAADNSRPTTVEVSTADFVMKDKPHFFFLERYKDSYEEEILRFAEAIGT
CEEEEEECCCCCCCCCCCCCEEEEECHHEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCC
NQETPCTGNDGLQAGRIARAAQQSLAFGMPVSIEHTEKIAF
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHCCC
>Mature Secondary Structure 
TKQIVTGIIGAGRIGKLHVQNISRIPHMKIKAISDIQASRIKSWADSHQIEYITSDYRD
CHHHHHHHHCCCCCCEEEHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCEEEHHHHHHH
LLHDPDIDAIFICSPTAVHAQMIKEAAEAKKHIFCEKPVSFSLDETSEALAAVRKHGVTL
HHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCEE
QVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPPNIDYVRTSGGLFMDMSIHDF
EECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEEEEECHH
DMARYIMGSEVTEVYAKGAALVNPSFAELGDIDTAVITLTFENGAMAVIDNSRQAVYGYD
HHHHHHHCCHHHHHHHCCCEEECCCHHHHCCCCEEEEEEEECCCEEEEEECCCCEEECCC
QRVEVFGTKGSAAADNSRPTTVEVSTADFVMKDKPHFFFLERYKDSYEEEILRFAEAIGT
CEEEEEECCCCCCCCCCCCCEEEEECHHEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCC
NQETPCTGNDGLQAGRIARAAQQSLAFGMPVSIEHTEKIAF
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289