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The map label for this gene is yrrN

Identifier: 16079789

GI number: 16079789

Start: 2794147

End: 2795076

Strand: Reverse

Name: yrrN

Synonym: BSU27350

Alternate gene names: 16079789

Gene position: 2795076-2794147 (Counterclockwise)

Preceding gene: 16079790

Following gene: 16079788

Centisome position: 66.3

GC content: 43.33

Gene sequence:

>930_bases
ATGAAAAAACCAGAGCTCTTAGTGACGCCGACGAGTACAGCGGACATTTTGCCGCTCATACAGGCTGGGGCAACTGCGTT
TTTAGTTGGGGAACAGAGATACGGCTTGAGATTAGCCGGAGAATTTTCTCGTGAAGATGTAACAAAAGCCGTAGAGATTG
CTCACAAAGAAGGGGCAAAAGTATACGTTGCTGTAAATGCAATTTTCCATAATGATAAAGTGGGTGAGCTTGGCGAATAT
CTGGCTTTCTTAGCAGAAGCCGGTGTCGATGCAGCGGTATTCGGCGATCCTGCCGTGCTGATGGCTGCCCGTGAATCTGC
GCCTGATCTGAAGCTTCATTGGAGCACAGAAACGACAGGCACCAACTATTATACATGCAACTACTGGGGACGCAAGGGTG
CGGCGCGTTCTGTGCTTGCCAGAGAATTAAACATGGACAGCATTGTTGAGATTAAAGAAAATGCTGAAGTCGAAATTGAA
ATCCAGGTGCATGGAATGACGTGCATGTTCCAATCGAAGCGTTCTTTGATTGGAAACTATTTTGAATATCAGGGCAAAGT
CATGGACATTGAAAGAAAGAAAAAAGAATCAGGCATGTTTTTACACGATAAAGAACGCGATAATAAATATCCGATTTTCG
AAGATGAAAACGGCACTCACATCATGAGCCCGAACGATGTGTGCATCATTGATGAGCTCGAGGAATTGATAGATGCCGGA
ATTGATTCTTTCAAAATCGATGGTGTTTTGAAAATGCCTGAATACCTAATAGAAGTCACCAAAATGTACAGAGAAGCAAT
TGATTTGTGCGTGGAAAACCGTGACGAATACGAAGCGAAAAAAGAAGACTGGATCGAACGCATTGAAAGCATCCAGCCAG
TAAACAGAAAAATTGATACCGGATTCTTCTTCAAGGAAACGGTTTATTAA

Upstream 100 bases:

>100_bases
ATGAATATAATCATTGGCTGATGAATCATCCGGATTATCAAACTGCGATTATTCCTGTCGGGGACGGACTTGCGATTAGT
AAAAAGAAGAGGTGAACGTC

Downstream 100 bases:

>100_bases
TCAAAAGGAGGTTAAGCTATGACTGCCGTAAATGATAAAATATCCACAATCGTTAATGGAAAGCGTGTGATTACGAAAAA
GCCGGAGCTTCTCGCACCTG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKKPELLVTPTSTADILPLIQAGATAFLVGEQRYGLRLAGEFSREDVTKAVEIAHKEGAKVYVAVNAIFHNDKVGELGEY
LAFLAEAGVDAAVFGDPAVLMAARESAPDLKLHWSTETTGTNYYTCNYWGRKGAARSVLARELNMDSIVEIKENAEVEIE
IQVHGMTCMFQSKRSLIGNYFEYQGKVMDIERKKKESGMFLHDKERDNKYPIFEDENGTHIMSPNDVCIIDELEELIDAG
IDSFKIDGVLKMPEYLIEVTKMYREAIDLCVENRDEYEAKKEDWIERIESIQPVNRKIDTGFFFKETVY

Sequences:

>Translated_309_residues
MKKPELLVTPTSTADILPLIQAGATAFLVGEQRYGLRLAGEFSREDVTKAVEIAHKEGAKVYVAVNAIFHNDKVGELGEY
LAFLAEAGVDAAVFGDPAVLMAARESAPDLKLHWSTETTGTNYYTCNYWGRKGAARSVLARELNMDSIVEIKENAEVEIE
IQVHGMTCMFQSKRSLIGNYFEYQGKVMDIERKKKESGMFLHDKERDNKYPIFEDENGTHIMSPNDVCIIDELEELIDAG
IDSFKIDGVLKMPEYLIEVTKMYREAIDLCVENRDEYEAKKEDWIERIESIQPVNRKIDTGFFFKETVY
>Mature_309_residues
MKKPELLVTPTSTADILPLIQAGATAFLVGEQRYGLRLAGEFSREDVTKAVEIAHKEGAKVYVAVNAIFHNDKVGELGEY
LAFLAEAGVDAAVFGDPAVLMAARESAPDLKLHWSTETTGTNYYTCNYWGRKGAARSVLARELNMDSIVEIKENAEVEIE
IQVHGMTCMFQSKRSLIGNYFEYQGKVMDIERKKKESGMFLHDKERDNKYPIFEDENGTHIMSPNDVCIIDELEELIDAG
IDSFKIDGVLKMPEYLIEVTKMYREAIDLCVENRDEYEAKKEDWIERIESIQPVNRKIDTGFFFKETVY

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family

Homologues:

Organism=Escherichia coli, GI1788397, Length=310, Percent_Identity=31.6129032258064, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081910, Length=269, Percent_Identity=29.7397769516729, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789548, Length=315, Percent_Identity=23.8095238095238, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRRN_BACSU (O32035)

Other databases:

- EMBL:   AL009126
- PIR:   G69979
- RefSeq:   NP_390613.1
- ProteinModelPortal:   O32035
- EnsemblBacteria:   EBBACT00000001990
- GeneID:   937559
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27350
- NMPDR:   fig|224308.1.peg.2738
- GenoList:   BSU27350
- GeneTree:   EBGT00050000001870
- HOGENOM:   HBG475797
- OMA:   KYPIFED
- PhylomeDB:   O32035
- ProtClustDB:   CLSK872980
- BioCyc:   BSUB:BSU27350-MONOMER
- GO:   GO:0006508
- InterPro:   IPR001539

Pfam domain/function: PF01136 Peptidase_U32

EC number: 3.4.-.- [C]

Molecular weight: Translated: 35079; Mature: 35079

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPELLVTPTSTADILPLIQAGATAFLVGEQRYGLRLAGEFSREDVTKAVEIAHKEGAK
CCCCCEEEECCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCE
VYVAVNAIFHNDKVGELGEYLAFLAEAGVDAAVFGDPAVLMAARESAPDLKLHWSTETTG
EEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEEEECCCCC
TNYYTCNYWGRKGAARSVLARELNMDSIVEIKENAEVEIEIQVHGMTCMFQSKRSLIGNY
CCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEEEEEECEEEEEHHHHHHHHHH
FEYQGKVMDIERKKKESGMFLHDKERDNKYPIFEDENGTHIMSPNDVCIIDELEELIDAG
HHHCCEEEEHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEECCCCEEEHHHHHHHHHCC
IDSFKIDGVLKMPEYLIEVTKMYREAIDLCVENRDEYEAKKEDWIERIESIQPVNRKIDT
CCCEEECCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
GFFFKETVY
CEEEEECCC
>Mature Secondary Structure
MKKPELLVTPTSTADILPLIQAGATAFLVGEQRYGLRLAGEFSREDVTKAVEIAHKEGAK
CCCCCEEEECCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCE
VYVAVNAIFHNDKVGELGEYLAFLAEAGVDAAVFGDPAVLMAARESAPDLKLHWSTETTG
EEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEEEECCCCC
TNYYTCNYWGRKGAARSVLARELNMDSIVEIKENAEVEIEIQVHGMTCMFQSKRSLIGNY
CCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEEEEEECEEEEEHHHHHHHHHH
FEYQGKVMDIERKKKESGMFLHDKERDNKYPIFEDENGTHIMSPNDVCIIDELEELIDAG
HHHCCEEEEHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEECCCCEEEHHHHHHHHHCC
IDSFKIDGVLKMPEYLIEVTKMYREAIDLCVENRDEYEAKKEDWIERIESIQPVNRKIDT
CCCEEECCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
GFFFKETVY
CEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377