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The map label for this gene is yrrO

Identifier: 16079788

GI number: 16079788

Start: 2792860

End: 2794128

Strand: Reverse

Name: yrrO

Synonym: BSU27340

Alternate gene names: 16079788

Gene position: 2794128-2792860 (Counterclockwise)

Preceding gene: 16079789

Following gene: 16079787

Centisome position: 66.28

GC content: 45.55

Gene sequence:

>1269_bases
ATGACTGCCGTAAATGATAAAATATCCACAATCGTTAATGGAAAGCGTGTGATTACGAAAAAGCCGGAGCTTCTCGCACC
TGCGGGTAATCTTGAAAAGCTGAAAATCGCTGTTCATTACGGAGCGGACGCGGTCTTTATCGGGGGACAGGAATACGGGC
TTCGCTCGAATGCCGATAACTTTACGATCGAAGAAATTGCAGAAGGCGTTGAATTCGCAAAGAAATATGGCGCGAAGATC
TACGTAACAACGAATATTTTCGCTCATAATGAAAACATGGACGGGCTTGAAGACTATTTAAAAGCGCTTGGAGACGCCAA
CGTTGCCGGTATTATTGTGGCAGATCCGCTTATTATTGAAACATGCCGCAGAGTGGCGCCGAATGTTGAGGTTCACTTGA
GCACACAGCAGTCTCTTTCAAACTGGAAGGCTGTCCAGTTCTGGAAGGAAGAAGGTCTCGACCGCGTCGTGCTGGCACGT
GAAACTAGCGCTCTTGAAATCAGAGAAATGAAAGAAAAGGTAGATATCGAAATCGAATCCTTCATTCATGGCGCAATGTG
TATTGCATATTCCGGCCGCTGCGTGCTGAGCAATCACATGACAGCGCGGGATTCCAACCGCGGAGGCTGCTGCCAGTCAT
GCCGCTGGGATTATGATCTCTACCAAACAGACGGTGCCAACGCCGTTGCTTTGTATGGTGAAGAAGATGCACCATTTGCG
ATGAGCCCGAAAGATTTGAAGCTGATTGAATCCATTCCAAAAATGATTGAAATGGGGATCGACAGCTTAAAGATTGAAGG
CCGCATGAAATCCATTCACTATGTAGCAACTGTTGTCAGCGTATACCGCAAAGTAATCGATGCTTATTGCGCTGATCCAG
AAAACTTTGTGATTCAAAAAGAATGGCTTGAAGAGCTTGATAAGTGCGCCAACAGGGACACTGCGACAGCTTTCTTTGAA
GGAACGCCAGGCTATGAAGAGCAAATGTTCGGCGAACACGCCAAGAAAACGACATATGATTTTGTCGGCTTAGTGCTGAA
TTATGATGAAGATACACAAATGGTCACGCTTCAGCAGCGCAATTTCTTCAAAAAAGGCGACGAAGTGGAATTTTTCGGTC
CAGAAATCGAAAACTTTACACATACGATTGAAACCATTTGGGACGAAGACGGAAATGAGCTAGATGCTGCCCGCCATCCC
CTGCAAATTGTCAAATTCAAACTAGACAAAAAGATTTATCCGAGCAACATGATGAGAAAGGGGAAGTAA

Upstream 100 bases:

>100_bases
CTGGATCGAACGCATTGAAAGCATCCAGCCAGTAAACAGAAAAATTGATACCGGATTCTTCTTCAAGGAAACGGTTTATT
AATCAAAAGGAGGTTAAGCT

Downstream 100 bases:

>100_bases
CAGCCCATGGGTAAGAATCCAGTAGTCATTGGAATCGCAGGAGGTTCCGGTTCAGGAAAAACGAGTGTCACACGGTCCAT
TTATGAACAGTTTAAAGGAC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTAVNDKISTIVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADNFTIEEIAEGVEFAKKYGAKI
YVTTNIFAHNENMDGLEDYLKALGDANVAGIIVADPLIIETCRRVAPNVEVHLSTQQSLSNWKAVQFWKEEGLDRVVLAR
ETSALEIREMKEKVDIEIESFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYGEEDAPFA
MSPKDLKLIESIPKMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQKEWLEELDKCANRDTATAFFE
GTPGYEEQMFGEHAKKTTYDFVGLVLNYDEDTQMVTLQQRNFFKKGDEVEFFGPEIENFTHTIETIWDEDGNELDAARHP
LQIVKFKLDKKIYPSNMMRKGK

Sequences:

>Translated_422_residues
MTAVNDKISTIVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADNFTIEEIAEGVEFAKKYGAKI
YVTTNIFAHNENMDGLEDYLKALGDANVAGIIVADPLIIETCRRVAPNVEVHLSTQQSLSNWKAVQFWKEEGLDRVVLAR
ETSALEIREMKEKVDIEIESFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYGEEDAPFA
MSPKDLKLIESIPKMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQKEWLEELDKCANRDTATAFFE
GTPGYEEQMFGEHAKKTTYDFVGLVLNYDEDTQMVTLQQRNFFKKGDEVEFFGPEIENFTHTIETIWDEDGNELDAARHP
LQIVKFKLDKKIYPSNMMRKGK
>Mature_421_residues
TAVNDKISTIVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADNFTIEEIAEGVEFAKKYGAKIY
VTTNIFAHNENMDGLEDYLKALGDANVAGIIVADPLIIETCRRVAPNVEVHLSTQQSLSNWKAVQFWKEEGLDRVVLARE
TSALEIREMKEKVDIEIESFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYGEEDAPFAM
SPKDLKLIESIPKMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQKEWLEELDKCANRDTATAFFEG
TPGYEEQMFGEHAKKTTYDFVGLVLNYDEDTQMVTLQQRNFFKKGDEVEFFGPEIENFTHTIETIWDEDGNELDAARHPL
QIVKFKLDKKIYPSNMMRKGK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family

Homologues:

Organism=Escherichia coli, GI1788397, Length=421, Percent_Identity=33.729216152019, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI87081910, Length=272, Percent_Identity=38.2352941176471, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1789548, Length=318, Percent_Identity=34.2767295597484, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRRO_BACSU (O32034)

Other databases:

- EMBL:   AL009126
- PIR:   H69979
- RefSeq:   NP_390612.1
- ProteinModelPortal:   O32034
- MEROPS:   U32.002
- EnsemblBacteria:   EBBACT00000002602
- GeneID:   937561
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27340
- NMPDR:   fig|224308.1.peg.2737
- GenoList:   BSU27340
- GeneTree:   EBGT00050000001870
- HOGENOM:   HBG463792
- OMA:   CMIEHID
- PhylomeDB:   O32034
- ProtClustDB:   CLSK2752461
- BioCyc:   BSUB:BSU27340-MONOMER
- GO:   GO:0006508
- InterPro:   IPR013785
- InterPro:   IPR001539
- Gene3D:   G3DSA:3.20.20.70

Pfam domain/function: PF01136 Peptidase_U32

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47630; Mature: 47498

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVNDKISTIVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADN
CCCCCCHHHHHCCCCEEEECCCCEECCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCC
FTIEEIAEGVEFAKKYGAKIYVTTNIFAHNENMDGLEDYLKALGDANVAGIIVADPLIIE
CCHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECHHHHH
TCRRVAPNVEVHLSTQQSLSNWKAVQFWKEEGLDRVVLARETSALEIREMKEKVDIEIES
HHHHHCCCCEEEEECHHHHCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCEEHHH
FIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYGEEDAPFA
HHHHEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC
MSPKDLKLIESIPKMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQK
CCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH
EWLEELDKCANRDTATAFFEGTPGYEEQMFGEHAKKTTYDFVGLVLNYDEDTQMVTLQQR
HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCEEEEEEHH
NFFKKGDEVEFFGPEIENFTHTIETIWDEDGNELDAARHPLQIVKFKLDKKIYPSNMMRK
HHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCHHHEEEHHCCCCCCCHHHCC
GK
CC
>Mature Secondary Structure 
TAVNDKISTIVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADN
CCCCCHHHHHCCCCEEEECCCCEECCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCC
FTIEEIAEGVEFAKKYGAKIYVTTNIFAHNENMDGLEDYLKALGDANVAGIIVADPLIIE
CCHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECHHHHH
TCRRVAPNVEVHLSTQQSLSNWKAVQFWKEEGLDRVVLARETSALEIREMKEKVDIEIES
HHHHHCCCCEEEEECHHHHCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCEEHHH
FIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYGEEDAPFA
HHHHEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC
MSPKDLKLIESIPKMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQK
CCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH
EWLEELDKCANRDTATAFFEGTPGYEEQMFGEHAKKTTYDFVGLVLNYDEDTQMVTLQQR
HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCEEEEEEHH
NFFKKGDEVEFFGPEIENFTHTIETIWDEDGNELDAARHPLQIVKFKLDKKIYPSNMMRK
HHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCHHHEEEHHCCCCCCCHHHCC
GK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377