Click here to switch to the map view.

The map label for this gene is yqaJ

Identifier: 16079682

GI number: 16079682

Start: 2696030

End: 2696989

Strand: Reverse

Name: yqaJ

Synonym: BSU26290

Alternate gene names: 16079682

Gene position: 2696989-2696030 (Counterclockwise)

Preceding gene: 16079683

Following gene: 16079681

Centisome position: 63.98

GC content: 40.31

Gene sequence:

>960_bases
ATGACAAGCAAACGGGCTGAGGTTCTTGCTAAGAATTCTGAAATGAGCCGTGATGAATGGCTTATTGAAAGAAGAAAAGG
AATTGGCGGCTCAGATGCATCCATTATCTTGGGGCTGAACAAGTGGAAGACACCTTTTGAATTATGGTTAGACAAAACAG
GACAGGTCCCTGTTAGTGAATCGCAAAGTGAAGCTGCTTACTTTGGATCATTGCTAGAAGATATTGTTGCAAAAGAATTT
GAGATACGTAGTGGCAAGAAGGTTAGACGTAAAAAAGCAATACTCAGACATCCAGAATATAATTTCATTTTGGCTAATGT
TGATCGAATGATCGTTGGTGAAAAAGCGATCCTTGAATGTAAAACAACATCAGCCTACAACTTAAAAGAATGGGAGGACG
AAGAAATCCCCGAGAGCTATATCGTTCAGGTCCAGCATTATCTGGGTGTGCTTGGACCTGAATATCGGAAAGCTTATTTT
GCTGTGCTGATTGGCGGGAACAAATTTGTCTGGAAAGAGATTGAGCGAGACGACGAGTTAATTGACATGATCTTTAAAGC
AGAGATTGAGTTCTGGAATGACAAGGTCTTAGGTGGACAAGCTCCTGCTTTAGATGGTTCAAGTGCTGCGGAGGAATACC
TCAAAAAACGATATGCCGAAACGGAAAATAACAAAGCTATTGATTTAACTGCGGCTAATCGAGAACGTATTCAACAATAC
TTGCTTATTAAAGAACAGATCTCAGAGCTTCAAAGCCAGGCAAAAGAATTAGAGAACCAAATCAAACATGAAATGAAGGA
TGCAGAGTATGGGTTTATCGGTAACTATCAAGCTTGCTGGAAGCCTGTTGTCTCAAATCGAATTGACACGAAAAAGCTCA
AAGACCAGTTTCCGGATGTATACGAGAAAGTTAAAAAGGAAACTCATTTCAGACGTTTTGGAATCAAGGAGGTTAGCTGA

Upstream 100 bases:

>100_bases
CCCACTCGGCAAAGTGGACTTCTTTAAAGGCTATCTAAAAAAACTCATGTGCAAATATTTTATCAGATAGCCTCAATAAA
AACAATGGGGGTTAGGTGGA

Downstream 100 bases:

>100_bases
TTATGGCTACTAATCAATCAATTAAAAACAACATCCAAAAGAAACAAAAAAACGTACCTGTGCAACAACAAGGAGCAACA
ATGAAAGGGCTACTTTCCTC

Product: nuclease; skin element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTSKRAEVLAKNSEMSRDEWLIERRKGIGGSDASIILGLNKWKTPFELWLDKTGQVPVSESQSEAAYFGSLLEDIVAKEF
EIRSGKKVRRKKAILRHPEYNFILANVDRMIVGEKAILECKTTSAYNLKEWEDEEIPESYIVQVQHYLGVLGPEYRKAYF
AVLIGGNKFVWKEIERDDELIDMIFKAEIEFWNDKVLGGQAPALDGSSAAEEYLKKRYAETENNKAIDLTAANRERIQQY
LLIKEQISELQSQAKELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDVYEKVKKETHFRRFGIKEVS

Sequences:

>Translated_319_residues
MTSKRAEVLAKNSEMSRDEWLIERRKGIGGSDASIILGLNKWKTPFELWLDKTGQVPVSESQSEAAYFGSLLEDIVAKEF
EIRSGKKVRRKKAILRHPEYNFILANVDRMIVGEKAILECKTTSAYNLKEWEDEEIPESYIVQVQHYLGVLGPEYRKAYF
AVLIGGNKFVWKEIERDDELIDMIFKAEIEFWNDKVLGGQAPALDGSSAAEEYLKKRYAETENNKAIDLTAANRERIQQY
LLIKEQISELQSQAKELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDVYEKVKKETHFRRFGIKEVS
>Mature_318_residues
TSKRAEVLAKNSEMSRDEWLIERRKGIGGSDASIILGLNKWKTPFELWLDKTGQVPVSESQSEAAYFGSLLEDIVAKEFE
IRSGKKVRRKKAILRHPEYNFILANVDRMIVGEKAILECKTTSAYNLKEWEDEEIPESYIVQVQHYLGVLGPEYRKAYFA
VLIGGNKFVWKEIERDDELIDMIFKAEIEFWNDKVLGGQAPALDGSSAAEEYLKKRYAETENNKAIDLTAANRERIQQYL
LIKEQISELQSQAKELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDVYEKVKKETHFRRFGIKEVS

Specific function: Unknown

COG id: COG5377

COG function: function code L; Phage-related protein, predicted endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQAJ_BACSU (P45907)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   A69945
- RefSeq:   NP_390506.1
- ProteinModelPortal:   P45907
- EnsemblBacteria:   EBBACT00000000047
- GeneID:   937681
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26290
- NMPDR:   fig|224308.1.peg.2631
- GenoList:   BSU26290
- GeneTree:   EBGT00050000005906
- HOGENOM:   HBG516014
- OMA:   EGVPEYV
- ProtClustDB:   CLSK793304
- BioCyc:   BSUB:BSU26290-MONOMER
- InterPro:   IPR011604
- InterPro:   IPR017482
- InterPro:   IPR011335
- InterPro:   IPR019080
- Gene3D:   G3DSA:3.90.320.10
- TIGRFAMs:   TIGR03033

Pfam domain/function: PF09588 YqaJ; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 36960; Mature: 36828

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKRAEVLAKNSEMSRDEWLIERRKGIGGSDASIILGLNKWKTPFELWLDKTGQVPVSE
CCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCC
SQSEAAYFGSLLEDIVAKEFEIRSGKKVRRKKAILRHPEYNFILANVDRMIVGEKAILEC
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCHHHHHCCHHHEEE
KTTSAYNLKEWEDEEIPESYIVQVQHYLGVLGPEYRKAYFAVLIGGNKFVWKEIERDDEL
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHEEEEEEECCCEEEHHHHCCCHHH
IDMIFKAEIEFWNDKVLGGQAPALDGSSAAEEYLKKRYAETENNKAIDLTAANRERIQQY
HHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
LLIKEQISELQSQAKELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCHHH
YEKVKKETHFRRFGIKEVS
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSKRAEVLAKNSEMSRDEWLIERRKGIGGSDASIILGLNKWKTPFELWLDKTGQVPVSE
CCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCC
SQSEAAYFGSLLEDIVAKEFEIRSGKKVRRKKAILRHPEYNFILANVDRMIVGEKAILEC
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCHHHHHCCHHHEEE
KTTSAYNLKEWEDEEIPESYIVQVQHYLGVLGPEYRKAYFAVLIGGNKFVWKEIERDDEL
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHEEEEEEECCCEEEHHHHCCCHHH
IDMIFKAEIEFWNDKVLGGQAPALDGSSAAEEYLKKRYAETENNKAIDLTAANRERIQQY
HHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
LLIKEQISELQSQAKELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCHHH
YEKVKKETHFRRFGIKEVS
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895