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The map label for this gene is yqaK

Identifier: 16079681

GI number: 16079681

Start: 2695173

End: 2696027

Strand: Reverse

Name: yqaK

Synonym: BSU26280

Alternate gene names: 16079681

Gene position: 2696027-2695173 (Counterclockwise)

Preceding gene: 16079682

Following gene: 255767609

Centisome position: 63.95

GC content: 40.23

Gene sequence:

>855_bases
ATGGCTACTAATCAATCAATTAAAAACAACATCCAAAAGAAACAAAAAAACGTACCTGTGCAACAACAAGGAGCAACAAT
GAAAGGGCTACTTTCCTCACCATCTGTTATTAAACGATTTGAGGAAGTGTTAGGGAAGAGGGCTACACAGTTTACTGCTT
CTATCTTAAGCCTTTATAACAGCGAGCAGATGCTACAGAAAACAGATCCTATGAGCGTCATATCCTCAGCAATGGTGGCA
GCTACACTCGATTTACCTATAGATAAAAACTTAGGGTATGCCTGGATTGTTCCTTACGGAGGTAAGGCTCAATTTCAGCT
TGGATACAAAGGATATATCCAGCTAGCCTTACGAACAGGCCAATATAAATCCATCAATTGCATACCGATTCATGAAGGCG
AATTGCAGAAGTGGAATCCGTTGACTGAGGAGATCGAGATTGATTTTGAAAAACGAGAATCAGACGCGGTAATTGGTTAT
GCAGCTTATTTTGAGTTGATAAATGGCTTCCGAAAAACAGTGTACTGGACAAAGGCACAAGTAGAGAAGCACAAAAAGAA
ATTCAGTAAGTCTGATTTTGGATGGAAAAATGACTGGGATGCGATGGCTCTTAAGACTGTATTAAAAGCAGTTTTGAGCA
AGTGGGGGATTCTCTCTGTTGAAATGCAAAAAGCAGTTATTGAGGAAGATGAAACAAGGGAACGGATTGACATTACCAAT
GAGGCAGACAGTTCAGAAATTATCGATTCCGAGCCTTCAAACAAAGATGAAACGGAAAAACCAAGCGCCCAAGAAACCGA
TCCTTTTGACGGCAAGCCTGTAGATATAAAAGACGATGAACTTCCGTTTGATTGA

Upstream 100 bases:

>100_bases
TTGACACGAAAAAGCTCAAAGACCAGTTTCCGGATGTATACGAGAAAGTTAAAAAGGAAACTCATTTCAGACGTTTTGGA
ATCAAGGAGGTTAGCTGATT

Downstream 100 bases:

>100_bases
GCCGGCATCTCTGACATAACTGCACTCTGTGAAAGGAAGTAGGTGATTGACTTGGACATAAAAGCAATGGGGTATGTGGT
CATACCCCGACTACCATTCA

Product: DNA recombination protein; skin element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MATNQSIKNNIQKKQKNVPVQQQGATMKGLLSSPSVIKRFEEVLGKRATQFTASILSLYNSEQMLQKTDPMSVISSAMVA
ATLDLPIDKNLGYAWIVPYGGKAQFQLGYKGYIQLALRTGQYKSINCIPIHEGELQKWNPLTEEIEIDFEKRESDAVIGY
AAYFELINGFRKTVYWTKAQVEKHKKKFSKSDFGWKNDWDAMALKTVLKAVLSKWGILSVEMQKAVIEEDETRERIDITN
EADSSEIIDSEPSNKDETEKPSAQETDPFDGKPVDIKDDELPFD

Sequences:

>Translated_284_residues
MATNQSIKNNIQKKQKNVPVQQQGATMKGLLSSPSVIKRFEEVLGKRATQFTASILSLYNSEQMLQKTDPMSVISSAMVA
ATLDLPIDKNLGYAWIVPYGGKAQFQLGYKGYIQLALRTGQYKSINCIPIHEGELQKWNPLTEEIEIDFEKRESDAVIGY
AAYFELINGFRKTVYWTKAQVEKHKKKFSKSDFGWKNDWDAMALKTVLKAVLSKWGILSVEMQKAVIEEDETRERIDITN
EADSSEIIDSEPSNKDETEKPSAQETDPFDGKPVDIKDDELPFD
>Mature_283_residues
ATNQSIKNNIQKKQKNVPVQQQGATMKGLLSSPSVIKRFEEVLGKRATQFTASILSLYNSEQMLQKTDPMSVISSAMVAA
TLDLPIDKNLGYAWIVPYGGKAQFQLGYKGYIQLALRTGQYKSINCIPIHEGELQKWNPLTEEIEIDFEKRESDAVIGYA
AYFELINGFRKTVYWTKAQVEKHKKKFSKSDFGWKNDWDAMALKTVLKAVLSKWGILSVEMQKAVIEEDETRERIDITNE
ADSSEIIDSEPSNKDETEKPSAQETDPFDGKPVDIKDDELPFD

Specific function: Binds To Single-Stranded DNA And Also Promotes The Renaturation Of Complementary Single-Stranded DNA. Function In Recombination. Has A Function Similar To That Of Lambda Redb. [C]

COG id: COG3723

COG function: function code L; Recombinational DNA repair protein (RecE pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787611, Length=268, Percent_Identity=26.4925373134328, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQAK_BACSU (P45908)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   B69945
- RefSeq:   NP_390505.1
- ProteinModelPortal:   P45908
- EnsemblBacteria:   EBBACT00000000680
- GeneID:   937691
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26280
- NMPDR:   fig|224308.1.peg.2630
- GenoList:   BSU26280
- GeneTree:   EBGT00050000005881
- HOGENOM:   HBG423984
- OMA:   NDWDAMA
- ProtClustDB:   CLSK873640
- BioCyc:   BSUB:BSU26280-MONOMER
- InterPro:   IPR004590
- InterPro:   IPR018330
- TIGRFAMs:   TIGR00616

Pfam domain/function: PF03837 RecT

EC number: NA

Molecular weight: Translated: 32171; Mature: 32040

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNQSIKNNIQKKQKNVPVQQQGATMKGLLSSPSVIKRFEEVLGKRATQFTASILSLYN
CCCCHHHHHHHHHHHHCCCCHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SEQMLQKTDPMSVISSAMVAATLDLPIDKNLGYAWIVPYGGKAQFQLGYKGYIQLALRTG
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEEEECC
QYKSINCIPIHEGELQKWNPLTEEIEIDFEKRESDAVIGYAAYFELINGFRKTVYWTKAQ
CCCCEEEEECCCCCCCCCCCCCHHEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
VEKHKKKFSKSDFGWKNDWDAMALKTVLKAVLSKWGILSVEMQKAVIEEDETRERIDITN
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCHHHCCCCC
EADSSEIIDSEPSNKDETEKPSAQETDPFDGKPVDIKDDELPFD
CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATNQSIKNNIQKKQKNVPVQQQGATMKGLLSSPSVIKRFEEVLGKRATQFTASILSLYN
CCCHHHHHHHHHHHHCCCCHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SEQMLQKTDPMSVISSAMVAATLDLPIDKNLGYAWIVPYGGKAQFQLGYKGYIQLALRTG
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEEEECC
QYKSINCIPIHEGELQKWNPLTEEIEIDFEKRESDAVIGYAAYFELINGFRKTVYWTKAQ
CCCCEEEEECCCCCCCCCCCCCHHEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
VEKHKKKFSKSDFGWKNDWDAMALKTVLKAVLSKWGILSVEMQKAVIEEDETRERIDITN
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCHHHCCCCC
EADSSEIIDSEPSNKDETEKPSAQETDPFDGKPVDIKDDELPFD
CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895