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The map label for this gene is yqaS

Identifier: 16079673

GI number: 16079673

Start: 2689594

End: 2690313

Strand: Reverse

Name: yqaS

Synonym: BSU26200

Alternate gene names: 16079673

Gene position: 2690313-2689594 (Counterclockwise)

Preceding gene: 16079674

Following gene: 16079672

Centisome position: 63.82

GC content: 40.28

Gene sequence:

>720_bases
ATGGTTGATAAGCACATACAGGCGTATAAGGATTACGCCAAAGGTATGAAATACAAGGACCTTGCCGAGAAATATGGGGT
ATCTGTGAACACCATTAAATCGTGGAAACAACGCCATGGTTGGCAAAGAAAAAAGGGTGCACCCTTAAAAAAAGGTGTGC
ACACAAAAAAAGTAGGTGCACCACTCGGTAACAAGAATGCGTTAGGTAATAATGGCGGCGCACCTAAGGGAAATCAAAAC
GCTGTGACTCATGGATTCTTCTCTAAGTTCCTGCCAGAAGAAACGCTATCCATCATGGAAGGGATTCAAGAACGTTCGCC
TGTCGATATGATATGGGATCAGATACAGATCCAATATGCCGCAATAATAAGGGCGCAAAAGATCATGTTCGTTTCTGATA
AGCAGGAAATGATTAAAGAACTGAAAAAGAAAAAGTCTGTGCTATCTGAGACAAACGAAGTCGAAGAGGAAGAATTCGAA
TTTCAATTTTCTTGGGATCGTCATGCAACGTTCTTGAACGCTCAATCTCGTGCAATGGCAGAGCTCAGGAATTTAATTAA
ACAGTTTGATGAATTAGCCCATTCGGAAGACGAACGACGCCTTAAATTGGAGCATATGCGCTTAAATATCAACAAGAAAA
AAATAGAGATCGAAGAACTTACAGAAGAAGATAAACCTTTTGAGATCACCATTGTAAACAAAGGTGATGACAGTGATTAA

Upstream 100 bases:

>100_bases
GAAATAACTAATTTAATAAAAAAACATATTTAAGCTTCTTTTGAGGAGCTTTTTTATTTTCAAAACAACTCAATCTAAAA
GGAGGCGGCAGTGAATGTAG

Downstream 100 bases:

>100_bases
ACAGGTAAATCCACATTTTAAAGAATTTCTCTTTGACTGGAATCAAAAGTTTCAGTTTCTTGTGGGTGGTTATGGATCAT
CCAAAAGCTATCATGTGGCG

Product: phage-related terminase small subunit; skin element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MVDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGAPLGNKNALGNNGGAPKGNQN
AVTHGFFSKFLPEETLSIMEGIQERSPVDMIWDQIQIQYAAIIRAQKIMFVSDKQEMIKELKKKKSVLSETNEVEEEEFE
FQFSWDRHATFLNAQSRAMAELRNLIKQFDELAHSEDERRLKLEHMRLNINKKKIEIEELTEEDKPFEITIVNKGDDSD

Sequences:

>Translated_239_residues
MVDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGAPLGNKNALGNNGGAPKGNQN
AVTHGFFSKFLPEETLSIMEGIQERSPVDMIWDQIQIQYAAIIRAQKIMFVSDKQEMIKELKKKKSVLSETNEVEEEEFE
FQFSWDRHATFLNAQSRAMAELRNLIKQFDELAHSEDERRLKLEHMRLNINKKKIEIEELTEEDKPFEITIVNKGDDSD
>Mature_239_residues
MVDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGAPLGNKNALGNNGGAPKGNQN
AVTHGFFSKFLPEETLSIMEGIQERSPVDMIWDQIQIQYAAIIRAQKIMFVSDKQEMIKELKKKKSVLSETNEVEEEEFE
FQFSWDRHATFLNAQSRAMAELRNLIKQFDELAHSEDERRLKLEHMRLNINKKKIEIEELTEEDKPFEITIVNKGDDSD

Specific function: Unknown

COG id: COG5484

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQAS_BACSU (P45915)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   B69946
- RefSeq:   NP_390497.1
- ProteinModelPortal:   P45915
- EnsemblBacteria:   EBBACT00000003876
- GeneID:   937704
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26200
- NMPDR:   fig|224308.1.peg.2622
- GenoList:   BSU26200
- GeneTree:   EBGT00050000000980
- HOGENOM:   HBG535670
- OMA:   EYEFQFA
- ProtClustDB:   CLSK626608
- BioCyc:   BSUB:BSU26200-MONOMER
- InterPro:   IPR018925

Pfam domain/function: PF10668 Phage_terminase

EC number: NA

Molecular weight: Translated: 27666; Mature: 27666

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGA
CCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHCC
PLGNKNALGNNGGAPKGNQNAVTHGFFSKFLPEETLSIMEGIQERSPVDMIWDQIQIQYA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AIIRAQKIMFVSDKQEMIKELKKKKSVLSETNEVEEEEFEFQFSWDRHATFLNAQSRAMA
HHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCHHHHHHHHHHHHH
ELRNLIKQFDELAHSEDERRLKLEHMRLNINKKKIEIEELTEEDKPFEITIVNKGDDSD
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEEHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MVDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGA
CCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHCC
PLGNKNALGNNGGAPKGNQNAVTHGFFSKFLPEETLSIMEGIQERSPVDMIWDQIQIQYA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AIIRAQKIMFVSDKQEMIKELKKKKSVLSETNEVEEEEFEFQFSWDRHATFLNAQSRAMA
HHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCHHHHHHHHHHHHH
ELRNLIKQFDELAHSEDERRLKLEHMRLNINKKKIEIEELTEEDKPFEITIVNKGDDSD
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHEEHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895