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The map label for this gene is yqbA

Identifier: 16079671

GI number: 16079671

Start: 2686770

End: 2688302

Strand: Reverse

Name: yqbA

Synonym: BSU26180

Alternate gene names: 16079671

Gene position: 2688302-2686770 (Counterclockwise)

Preceding gene: 16079672

Following gene: 16079670

Centisome position: 63.77

GC content: 39.01

Gene sequence:

>1533_bases
ATGTCAAAAAAATCTGTTAAAGCACGAGTGATCAAAGCCTCTCCACCTACTGAATCAACGAAACAAATTTATGAAGATGA
ATTTGCTGACAGCTATGACAGCAATATTTTGCCTCCTCCGTATAACCTAAAGGAATTAAAAATGATTGCTGAGTATTCAA
CAATCTTACAGCAATGTGTTGATGCCTACAGGACAAATATTGTGGGCTTTGGATTTGATTTCGAGTATTCTTTTGATGTG
AATTCGCCAGATGTGACAAATGAAGAAAAAACAGAAGCTGAAAGTGAATGGACAAAGCTTGAAGAGTTCGTTAAATATCT
TCACTTTGATGAGTCAGCTGAGACTTTACTCGGATTTGTTATTGAAGATAGAGAAAAGACGGGCAATGGCTTTATTGAGG
TCATTCGAAACGGTGAAAATAAGCCAGCCGGCATTGAATACATGGACGTTCAAAATGTACGAGTTTGCAAACTGTCTGAA
CCAATCGAAGTTGATTTTACGTACTTCGAACAAGGACAAATGAAATCAATCAAAAGAGAGAAACGATTCCGAAAGTATGT
TCAGATGATTGACGGCCGTATGGTTTATTTTAAAGAATATGGTGATCCTCGCACTTTAAATTTAGAGACAGGTCAATATG
ATGAACAGACCCCATTGGAGAAACGAGCAAATGAAGTGGTCCATTTCAAAATAGGAAGCGGTATTTATGGGAAACCGCGA
TGGATTGGCCATATTGTTAATTTGTATGGTGCTCGTAAAGCTGAAGAGCTGAACTTTATGTACTTCAAACAAGGAAGACA
TATTCCCGCTGCCATCACAATAGAAAATGGAATGTTGTCTGAGGACTCATACACACAATTGCAGGATTACATGAATGGGC
TTGAAGGAGTGGAGAACGCTCATAAGTTTCTATTACTTGAAGCAGAAGGGATAGCGAAGGGGAAAAACATTCATGGTGAT
GAAGAGATTGCACCAGTGAAAGTTGATATTAAGTCACTTGCTGAAATCCTTCAAGAAGATGCTTTGTTTCTTGAATATGA
CCAAAAGAACCGAGATAAAATTAGATCGGCTTTTCGTTTGCCCCCACTTTATACAGGTGAAGCTCAAGATTACAACAGAG
CGACAGCTGACACAGCAAGAAAGATTACTGAGGAACAAGTATTTCAGCCTGAACGAAAATTAATCACAGGTAAACTGAAT
GCTTTATTTCTAAATGATCTTGAAATTCATAAAGTCCGACTCCAACTAAAAGGGCCAGACTTTAGAGATCCTTTAGAAAT
TGCTAAGGTTCTAACACCGTTTATAACAGCAGGTGCAGTTTCTCCGAATGATTTACGCGATTTGGCTGGACGGGTACTTG
GTAAGACGCTTGAAGAATGGCCAGAAGAAGAATACAACAGGCCGCTTGGTAAAACTAACGAGTCGTCCGTTTCCGATCCT
TTGGCTGCACTGTTTAAATCTAAGAACGGTACTCCTAATATGATCGGGTTATTAAAAGATATGCGGGATGTTCTGGAGGA
TTTGAAGAGATGA

Upstream 100 bases:

>100_bases
GTCAGCTATCTGGTACGCTCTCGATGATTATGAGGTAACCGATTTGAAAGAAGAATCAAAAGGAAGACCGCAAAGATCAA
GACCAGGAAGGAGGTAAAGC

Downstream 100 bases:

>100_bases
ACAAAACGGATAAGCTATTGGAGAGTTTAAATGTCTTTATTCAAAAAGCCGAGGAAAATCAGTATAAGCAATTGGGGGAG
ATGGTACCTGACTTTCCTGG

Product: phage capsid protein; skin element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSKKSVKARVIKASPPTESTKQIYEDEFADSYDSNILPPPYNLKELKMIAEYSTILQQCVDAYRTNIVGFGFDFEYSFDV
NSPDVTNEEKTEAESEWTKLEEFVKYLHFDESAETLLGFVIEDREKTGNGFIEVIRNGENKPAGIEYMDVQNVRVCKLSE
PIEVDFTYFEQGQMKSIKREKRFRKYVQMIDGRMVYFKEYGDPRTLNLETGQYDEQTPLEKRANEVVHFKIGSGIYGKPR
WIGHIVNLYGARKAEELNFMYFKQGRHIPAAITIENGMLSEDSYTQLQDYMNGLEGVENAHKFLLLEAEGIAKGKNIHGD
EEIAPVKVDIKSLAEILQEDALFLEYDQKNRDKIRSAFRLPPLYTGEAQDYNRATADTARKITEEQVFQPERKLITGKLN
ALFLNDLEIHKVRLQLKGPDFRDPLEIAKVLTPFITAGAVSPNDLRDLAGRVLGKTLEEWPEEEYNRPLGKTNESSVSDP
LAALFKSKNGTPNMIGLLKDMRDVLEDLKR

Sequences:

>Translated_510_residues
MSKKSVKARVIKASPPTESTKQIYEDEFADSYDSNILPPPYNLKELKMIAEYSTILQQCVDAYRTNIVGFGFDFEYSFDV
NSPDVTNEEKTEAESEWTKLEEFVKYLHFDESAETLLGFVIEDREKTGNGFIEVIRNGENKPAGIEYMDVQNVRVCKLSE
PIEVDFTYFEQGQMKSIKREKRFRKYVQMIDGRMVYFKEYGDPRTLNLETGQYDEQTPLEKRANEVVHFKIGSGIYGKPR
WIGHIVNLYGARKAEELNFMYFKQGRHIPAAITIENGMLSEDSYTQLQDYMNGLEGVENAHKFLLLEAEGIAKGKNIHGD
EEIAPVKVDIKSLAEILQEDALFLEYDQKNRDKIRSAFRLPPLYTGEAQDYNRATADTARKITEEQVFQPERKLITGKLN
ALFLNDLEIHKVRLQLKGPDFRDPLEIAKVLTPFITAGAVSPNDLRDLAGRVLGKTLEEWPEEEYNRPLGKTNESSVSDP
LAALFKSKNGTPNMIGLLKDMRDVLEDLKR
>Mature_509_residues
SKKSVKARVIKASPPTESTKQIYEDEFADSYDSNILPPPYNLKELKMIAEYSTILQQCVDAYRTNIVGFGFDFEYSFDVN
SPDVTNEEKTEAESEWTKLEEFVKYLHFDESAETLLGFVIEDREKTGNGFIEVIRNGENKPAGIEYMDVQNVRVCKLSEP
IEVDFTYFEQGQMKSIKREKRFRKYVQMIDGRMVYFKEYGDPRTLNLETGQYDEQTPLEKRANEVVHFKIGSGIYGKPRW
IGHIVNLYGARKAEELNFMYFKQGRHIPAAITIENGMLSEDSYTQLQDYMNGLEGVENAHKFLLLEAEGIAKGKNIHGDE
EIAPVKVDIKSLAEILQEDALFLEYDQKNRDKIRSAFRLPPLYTGEAQDYNRATADTARKITEEQVFQPERKLITGKLNA
LFLNDLEIHKVRLQLKGPDFRDPLEIAKVLTPFITAGAVSPNDLRDLAGRVLGKTLEEWPEEEYNRPLGKTNESSVSDPL
AALFKSKNGTPNMIGLLKDMRDVLEDLKR

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQBA_BACSU (P45917)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   D69946
- RefSeq:   NP_390495.1
- EnsemblBacteria:   EBBACT00000002590
- GeneID:   937707
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26180
- NMPDR:   fig|224308.1.peg.2620
- GenoList:   BSU26180
- GeneTree:   EBGT00050000005988
- HOGENOM:   HBG345204
- OMA:   DENRAND
- ProtClustDB:   CLSK887122
- BioCyc:   BSUB:BSU26180-MONOMER
- InterPro:   IPR006944
- InterPro:   IPR016753
- InterPro:   IPR006430
- PIRSF:   PIRSF019260
- TIGRFAMs:   TIGR01540

Pfam domain/function: PF04860 Phage_portal

EC number: NA

Molecular weight: Translated: 58459; Mature: 58328

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKSVKARVIKASPPTESTKQIYEDEFADSYDSNILPPPYNLKELKMIAEYSTILQQCV
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DAYRTNIVGFGFDFEYSFDVNSPDVTNEEKTEAESEWTKLEEFVKYLHFDESAETLLGFV
HHHHCCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IEDREKTGNGFIEVIRNGENKPAGIEYMDVQNVRVCKLSEPIEVDFTYFEQGQMKSIKRE
HHCCCCCCCCHHHHEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEECCCHHHHHHHH
KRFRKYVQMIDGRMVYFKEYGDPRTLNLETGQYDEQTPLEKRANEVVHFKIGSGIYGKPR
HHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHCCEEEEEEECCCCCCCHH
WIGHIVNLYGARKAEELNFMYFKQGRHIPAAITIENGMLSEDSYTQLQDYMNGLEGVENA
HHHHHHHHHCCCCHHHCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
HKFLLLEAEGIAKGKNIHGDEEIAPVKVDIKSLAEILQEDALFLEYDQKNRDKIRSAFRL
CEEEEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCEEEEECCCCHHHHHHHHCC
PPLYTGEAQDYNRATADTARKITEEQVFQPERKLITGKLNALFLNDLEIHKVRLQLKGPD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCEEEEEEEEECCCC
FRDPLEIAKVLTPFITAGAVSPNDLRDLAGRVLGKTLEEWPEEEYNRPLGKTNESSVSDP
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHH
LAALFKSKNGTPNMIGLLKDMRDVLEDLKR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKKSVKARVIKASPPTESTKQIYEDEFADSYDSNILPPPYNLKELKMIAEYSTILQQCV
CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DAYRTNIVGFGFDFEYSFDVNSPDVTNEEKTEAESEWTKLEEFVKYLHFDESAETLLGFV
HHHHCCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IEDREKTGNGFIEVIRNGENKPAGIEYMDVQNVRVCKLSEPIEVDFTYFEQGQMKSIKRE
HHCCCCCCCCHHHHEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEECCCHHHHHHHH
KRFRKYVQMIDGRMVYFKEYGDPRTLNLETGQYDEQTPLEKRANEVVHFKIGSGIYGKPR
HHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHCCEEEEEEECCCCCCCHH
WIGHIVNLYGARKAEELNFMYFKQGRHIPAAITIENGMLSEDSYTQLQDYMNGLEGVENA
HHHHHHHHHCCCCHHHCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
HKFLLLEAEGIAKGKNIHGDEEIAPVKVDIKSLAEILQEDALFLEYDQKNRDKIRSAFRL
CEEEEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCEEEEECCCCHHHHHHHHCC
PPLYTGEAQDYNRATADTARKITEEQVFQPERKLITGKLNALFLNDLEIHKVRLQLKGPD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCEEEEEEEEECCCC
FRDPLEIAKVLTPFITAGAVSPNDLRDLAGRVLGKTLEEWPEEEYNRPLGKTNESSVSDP
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHH
LAALFKSKNGTPNMIGLLKDMRDVLEDLKR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895