Click here to switch to the map view.

The map label for this gene is ypbH

Identifier: 16079354

GI number: 16079354

Start: 2403506

End: 2404090

Strand: Reverse

Name: ypbH

Synonym: BSU22970

Alternate gene names: 16079354

Gene position: 2404090-2403506 (Counterclockwise)

Preceding gene: 16079355

Following gene: 255767494

Centisome position: 57.03

GC content: 42.22

Gene sequence:

>585_bases
ATGCGGCTTGAGCGTCTGAATTATAATAAGATCAAAATCTTTTTAACCCTCGATGATTTGACAGACCGGGGATTGACAAA
AGAAGACCTCTGGAAGGACTCATTTAAAGTCCACCAGTTATTTAAAGATATGATGAATGAAGCAAATACAGAGCTCGGCT
TTGAAGCGAATGGACCGATTGCAGTGGAAGTGTATTCTCTCCAAGCACAAGGGATGGTCGTGATTGTAACAAAGAACCAA
GACGCCGATTCAGAAGACGATGAGTATGATGATGATTACATCGAAATGCAAGTCAAGCTTGATGAAAGCGCGGACATCAT
ATATCAATTCCATTCCTTTGAAGATATCATTCAGCTTTCAGAAAGCTTACAGCGAATCGGTATCACAGGGGGAACTGTCT
ACCACTATGACGGGCAGTACTTTTTAAGCCTTGAAGATCTAGGGTCACATACGGCTGAAGGGGTTGTGGCGGTTCTGGCT
GAATACGGCAATCCGACAACTTTAACGATTTATCGCCTGCAAGAGTATGGTAAGCTCATTATGGACGGTAATGCCGTAGA
AACGATACAAACTCATTTTTCATAA

Upstream 100 bases:

>100_bases
TGAACTCAGTGTAAACTGATAACAATTAAGAACCTATGACTCATCATCTCATATAATGTGTTATATGATTTGTGTGCAAG
TAGAGGCAGGAGGGAACGTT

Downstream 100 bases:

>100_bases
GAATGCAACGGAAAACTGCTGATTTCAGCAGTTTTTTTTCGTTAAAAAACATGGAAAAACATAACGTTTATTCTATGCAC
AGATCATATGAAGGTGTATA

Product: adaptor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRLERLNYNKIKIFLTLDDLTDRGLTKEDLWKDSFKVHQLFKDMMNEANTELGFEANGPIAVEVYSLQAQGMVVIVTKNQ
DADSEDDEYDDDYIEMQVKLDESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLA
EYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS

Sequences:

>Translated_194_residues
MRLERLNYNKIKIFLTLDDLTDRGLTKEDLWKDSFKVHQLFKDMMNEANTELGFEANGPIAVEVYSLQAQGMVVIVTKNQ
DADSEDDEYDDDYIEMQVKLDESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLA
EYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS
>Mature_194_residues
MRLERLNYNKIKIFLTLDDLTDRGLTKEDLWKDSFKVHQLFKDMMNEANTELGFEANGPIAVEVYSLQAQGMVVIVTKNQ
DADSEDDEYDDDYIEMQVKLDESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLA
EYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS

Specific function: Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Also involved in Spx degradation by ClpC. Acts negatively in the development of competence by binding ComK and rec

COG id: COG4862

COG function: function code OTN; Negative regulator of genetic competence, sporulation and motility

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mecA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MECA2_BACSU (P50734)

Other databases:

- EMBL:   L47648
- EMBL:   AL009126
- PIR:   C69933
- RefSeq:   NP_390178.1
- PDB:   3JTN
- PDB:   3JTO
- PDBsum:   3JTN
- PDBsum:   3JTO
- ProteinModelPortal:   P50734
- SMR:   P50734
- EnsemblBacteria:   EBBACT00000003810
- GeneID:   938980
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22970
- NMPDR:   fig|224308.1.peg.2301
- GenoList:   BSU22970
- GeneTree:   EBGT00050000001420
- HOGENOM:   HBG491202
- OMA:   DYIEMQV
- ProtClustDB:   PRK02899
- BioCyc:   BSUB:BSU22970-MONOMER
- HAMAP:   MF_01124
- InterPro:   IPR008681
- PIRSF:   PIRSF029008

Pfam domain/function: PF05389 MecA

EC number: NA

Molecular weight: Translated: 22157; Mature: 22157

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLERLNYNKIKIFLTLDDLTDRGLTKEDLWKDSFKVHQLFKDMMNEANTELGFEANGPI
CCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCE
AVEVYSLQAQGMVVIVTKNQDADSEDDEYDDDYIEMQVKLDESADIIYQFHSFEDIIQLS
EEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHH
ESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLI
HHHHHCCCCCCEEEEECCEEEEEHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHHCCCEE
MDGNAVETIQTHFS
ECCCHHEEHEECCC
>Mature Secondary Structure
MRLERLNYNKIKIFLTLDDLTDRGLTKEDLWKDSFKVHQLFKDMMNEANTELGFEANGPI
CCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCE
AVEVYSLQAQGMVVIVTKNQDADSEDDEYDDDYIEMQVKLDESADIIYQFHSFEDIIQLS
EEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHH
ESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLI
HHHHHCCCCCCEEEEECCEEEEEHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHHCCCEE
MDGNAVETIQTHFS
ECCCHHEEHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377