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The map label for this gene is dnaD

Identifier: 16079292

GI number: 16079292

Start: 2345433

End: 2346131

Strand: Reverse

Name: dnaD

Synonym: BSU22350

Alternate gene names: 16079292

Gene position: 2346131-2345433 (Counterclockwise)

Preceding gene: 16079293

Following gene: 16079291

Centisome position: 55.65

GC content: 39.63

Gene sequence:

>699_bases
ATGAAAAAACAGCAATTTATTGATATGCAGGAGCAGGGAACATCAACCATCCCCAATCTTCTGCTCACGCATTATAAACA
GCTTGGGCTTAATGAAACAGAACTTATTCTGCTGTTAAAAATTAAAATGCATTTAGAAAAAGGATCATATTTTCCTACAC
CGAATCAGCTGCAGGAAGGTATGTCAATTTCTGTTGAAGAATGTACAAACAGATTGCGGATGTTTATTCAAAAAGGCTTT
CTGTTTATTGAAGAATGCGAGGATCAAAACGGCATCAAATTTGAGAAATATTCTCTTCAGCCTTTATGGGGCAAGCTGTA
CGAGTATATTCAGCTTGCACAGAATCAAACACAGGAAAGAAAAGCAGAAGGGGAACAAAAAAGCCTTTATACCATTTTTG
AGGAAGAGTTCGCAAGACCGTTATCGCCTTTGGAGTGTGAAACGCTGGCGATCTGGCAGGACCAGGATCAGCATGACGCA
CAACTGATCAAACACGCGTTAAAAGAGGCTGTACTATCAGGAAAACTCAGTTTCCGCTACATTGACCGGATTTTGTTTGA
ATGGAAGAAAAATGGGCTTAAAACTGTGGAGCAGGCAAAAATACACAGCCAAAAATTCCGGCGTGTACAAGCAAAGCAGA
ATGAACCGCAAAAAGAGTATAAAAGGCAGGTTCCTTTTTACAATTGGCTTGAACAATAA

Upstream 100 bases:

>100_bases
ATCCGTAATACATTCAAATGAAACAAAAAAGAGTCTCCTGCAAGGGAGACTTTTTACAGTAAAGGGGCAATCACAATCCT
TTACAGTAAGAGGTGTGACG

Downstream 100 bases:

>100_bases
AGTGAAAAGGTGACAATCGTGTTAAATCTAAAACAAATTGAATTCTGTTTAGACAAGATAGGTGACATGTTTCCTCATGC
GGAGTGTGAACTGGTTCATT

Product: DNA-remodelling primosomal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGF
LFIEECEDQNGIKFEKYSLQPLWGKLYEYIQLAQNQTQERKAEGEQKSLYTIFEEEFARPLSPLECETLAIWQDQDQHDA
QLIKHALKEAVLSGKLSFRYIDRILFEWKKNGLKTVEQAKIHSQKFRRVQAKQNEPQKEYKRQVPFYNWLEQ

Sequences:

>Translated_232_residues
MKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGF
LFIEECEDQNGIKFEKYSLQPLWGKLYEYIQLAQNQTQERKAEGEQKSLYTIFEEEFARPLSPLECETLAIWQDQDQHDA
QLIKHALKEAVLSGKLSFRYIDRILFEWKKNGLKTVEQAKIHSQKFRRVQAKQNEPQKEYKRQVPFYNWLEQ
>Mature_232_residues
MKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGF
LFIEECEDQNGIKFEKYSLQPLWGKLYEYIQLAQNQTQERKAEGEQKSLYTIFEEEFARPLSPLECETLAIWQDQDQHDA
QLIKHALKEAVLSGKLSFRYIDRILFEWKKNGLKTVEQAKIHSQKFRRVQAKQNEPQKEYKRQVPFYNWLEQ

Specific function: Probable component of primosome involved in the initiation of DNA replication

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DNAD_BACSU (P39787)

Other databases:

- EMBL:   U11289
- EMBL:   L47709
- EMBL:   AL009126
- PIR:   I40524
- RefSeq:   NP_390116.1
- PDB:   2V79
- PDBsum:   2V79
- ProteinModelPortal:   P39787
- EnsemblBacteria:   EBBACT00000003358
- GeneID:   939040
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22350
- NMPDR:   fig|224308.1.peg.2239
- GenoList:   BSU22350
- GeneTree:   EBGT00050000002987
- HOGENOM:   HBG535292
- OMA:   MISEQYN
- ProtClustDB:   CLSK873101
- BioCyc:   BSUB:BSU22350-MONOMER
- InterPro:   IPR006343
- TIGRFAMs:   TIGR01446

Pfam domain/function: PF07261 DnaB_2

EC number: NA

Molecular weight: Translated: 27639; Mature: 27639

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEG
CCCCHHCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCC
MSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLYEYIQLAQNQTQER
CCCCHHHHHHHHHHHHHHCCHHEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
KAEGEQKSLYTIFEEEFARPLSPLECETLAIWQDQDQHDAQLIKHALKEAVLSGKLSFRY
HHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHH
IDRILFEWKKNGLKTVEQAKIHSQKFRRVQAKQNEPQKEYKRQVPFYNWLEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEG
CCCCHHCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCC
MSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKLYEYIQLAQNQTQER
CCCCHHHHHHHHHHHHHHCCHHEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
KAEGEQKSLYTIFEEEFARPLSPLECETLAIWQDQDQHDAQLIKHALKEAVLSGKLSFRY
HHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHH
IDRILFEWKKNGLKTVEQAKIHSQKFRRVQAKQNEPQKEYKRQVPFYNWLEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377