Click here to switch to the map view.

The map label for this gene is yppD

Identifier: 16079286

GI number: 16079286

Start: 2339226

End: 2339471

Strand: Reverse

Name: yppD

Synonym: BSU22280

Alternate gene names: 16079286

Gene position: 2339471-2339226 (Counterclockwise)

Preceding gene: 16079287

Following gene: 16079285

Centisome position: 55.5

GC content: 42.28

Gene sequence:

>246_bases
ATGTCCGGTTATGTATGCAAGACAGATATTCTCCGTATGCTTTCTGATATAGAAGATGAATTAACGCGAGCTGAGCAAAG
CCTGAATCATTCTGTAAATGCATTAGAGGCTGAGATGCGGGAAACGGAGAACGATCGCCTAAGTGTGCTCGAAGAAGAAA
TCATAGATCTTCATATTTGTATAAATGAGCTGTATCAATCGCCTGAACACAGGTATGCGTTTGAGAAGGTATACCGCATC
GGCTGA

Upstream 100 bases:

>100_bases
GTTTGTTTGGCGATTTGCTTCTAGTTTTGTCATGAGGAAGGAAAGAGCCTTGAGAGCAAAGAATGTTAACCGGGAGAGAC
AAGGAAAGGGAGGTACACGA

Downstream 100 bases:

>100_bases
ATTTGTGAGTGAAATTTGGTACGATAGGCATTGAGGTGAAAGATATTGCTATCACAAACTTTGCTGGAAATGACCGAGCA
AATGATTGAAGTTGCTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MSGYVCKTDILRMLSDIEDELTRAEQSLNHSVNALEAEMRETENDRLSVLEEEIIDLHICINELYQSPEHRYAFEKVYRI
G

Sequences:

>Translated_81_residues
MSGYVCKTDILRMLSDIEDELTRAEQSLNHSVNALEAEMRETENDRLSVLEEEIIDLHICINELYQSPEHRYAFEKVYRI
G
>Mature_80_residues
SGYVCKTDILRMLSDIEDELTRAEQSLNHSVNALEAEMRETENDRLSVLEEEIIDLHICINELYQSPEHRYAFEKVYRIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPPD_BACSU (P50832)

Other databases:

- EMBL:   L47838
- EMBL:   AL009126
- PIR:   A69940
- RefSeq:   NP_390110.1
- EnsemblBacteria:   EBBACT00000001651
- GeneID:   939042
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22280
- NMPDR:   fig|224308.1.peg.2233
- GenoList:   BSU22280
- GeneTree:   EBGT00050000002752
- HOGENOM:   HBG338129
- OMA:   HICINEL
- ProtClustDB:   CLSK887492
- BioCyc:   BSUB:BSU22280-MONOMER
- InterPro:   IPR020252
- ProDom:   PD059812

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9518; Mature: 9387

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGYVCKTDILRMLSDIEDELTRAEQSLNHSVNALEAEMRETENDRLSVLEEEIIDLHIC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
INELYQSPEHRYAFEKVYRIG
HHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SGYVCKTDILRMLSDIEDELTRAEQSLNHSVNALEAEMRETENDRLSVLEEEIIDLHIC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
INELYQSPEHRYAFEKVYRIG
HHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377