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The map label for this gene is yopO

Identifier: 16079141

GI number: 16079141

Start: 2207748

End: 2207960

Strand: Reverse

Name: yopO

Synonym: BSU20820

Alternate gene names: 16079141

Gene position: 2207960-2207748 (Counterclockwise)

Preceding gene: 16079142

Following gene: 16079140

Centisome position: 52.38

GC content: 36.15

Gene sequence:

>213_bases
ATGTCAGAGCGAATAAAACAGCTAATGGTCAAACGTGGCATCACAATAGAGGAATTGTCGAGGGAGACAATGATTGATAT
GCAGACATTAAACAAAATCATTGAAATGCCAGATGAATCAGATGTTACAACCATAAAGCTTATCGCTCTGGTGTTGAATG
TCTCTATTGATGAGTTATTAGATGAGAAAGGAGGAGAAGATAATGCAAAATAA

Upstream 100 bases:

>100_bases
ATTTAAAACGACACATTGCAATTGAATTTGAAGAGTTTATTTATCAACCATAACATATACGCACTGCAGTCTATAGTATA
CATAAAAATAGGAGGTTGAC

Downstream 100 bases:

>100_bases
AATTAAACAATTAAAAAATTATGCGGTTTACGATGATATCGAGGGCTTTTTAATCAATAAAGATATAAGAAGTAGCTCAG
GGAATTCTAACTATATGATG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSERIKQLMVKRGITIEELSRETMIDMQTLNKIIEMPDESDVTTIKLIALVLNVSIDELLDEKGGEDNAK

Sequences:

>Translated_70_residues
MSERIKQLMVKRGITIEELSRETMIDMQTLNKIIEMPDESDVTTIKLIALVLNVSIDELLDEKGGEDNAK
>Mature_69_residues
SERIKQLMVKRGITIEELSRETMIDMQTLNKIIEMPDESDVTTIKLIALVLNVSIDELLDEKGGEDNAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOPO_BACSU (O34791)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389964.1
- ProteinModelPortal:   O34791
- SMR:   O34791
- EnsemblBacteria:   EBBACT00000002431
- GeneID:   939435
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20820
- NMPDR:   fig|224308.1.peg.2087
- GenoList:   BSU20820
- BioCyc:   BSUB:BSU20820-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 7947; Mature: 7816

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERIKQLMVKRGITIEELSRETMIDMQTLNKIIEMPDESDVTTIKLIALVLNVSIDELL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHH
DEKGGEDNAK
HHCCCCCCCC
>Mature Secondary Structure 
SERIKQLMVKRGITIEELSRETMIDMQTLNKIIEMPDESDVTTIKLIALVLNVSIDELL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHH
DEKGGEDNAK
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377