Click here to switch to the map view.

The map label for this gene is yopP

Identifier: 16079140

GI number: 16079140

Start: 2206682

End: 2207758

Strand: Reverse

Name: yopP

Synonym: BSU20810

Alternate gene names: 16079140

Gene position: 2207758-2206682 (Counterclockwise)

Preceding gene: 16079141

Following gene: 16079139

Centisome position: 52.37

GC content: 33.98

Gene sequence:

>1077_bases
ATGCAAAATAAAATTAAACAATTAAAAAATTATGCGGTTTACGATGATATCGAGGGCTTTTTAATCAATAAAGATATAAG
AAGTAGCTCAGGGAATTCTAACTATATGATGCCTTCATCAACTAGAAGGGTGTCGAACACCAGAAAGAATTATGAAGGGG
ATATTAAGCAGTTCTTTAGTGTGATTAAAGGTAAAGATGTCAAAAGTTTAGTTCCCGATGATTTAGTTGTAAGTAAAAGC
GAATTAAGCAACTATGTGAAGTATCTTCAGGAAAAGGGATTAGTTAATAATAGTATTAACAGAAAAATGACCTCCTTGAA
GATGCTCTATACATATTTGGAGCATGATTATAAGGACTATATTGACTTGTCGGTGTTTAATACTGTCGAAAGGCTTAAAA
CAGTAACTAAAAACTGGGATAAAACAACCCAGACAGAAGCCGAAAGAATCGCTCAGGATATGTATATAAATGAAAGACAG
AAACCTTTAATGAAAAAGCTGTTTGTTAAATTCGCCATCAGAACTTCTTTTCGTGTAAGTGCGATTTTGCGAGTAAGATG
GAAAGACATACAGCTTGATGAAAGTACAGGCCATTATATAGTAACAGTTATTGATAAAGGATCTCAGGTTGTGTCTACAG
GCATTAACCAGGTATTTTATGAGGAATTGTTGCAGCTGAAGGAAGAGGATGACAGCGAAACTGAATTGGTTTTTCAGGGG
CTTTCGGAACAATCTTTACGACACTCCTTAAAAAGGTCGAAAAAAAGGTTAGGAATACCTCCTGAAAGAGAATTAGTCTT
ACACTCATTTAAGGGTGTAGGAATTGACTATGTCTATGAGAATTCTGGTCACGATTTACTTGCAGCAAAAGAACAAGGAA
ATCATAAAAACACATTAACAACAGAGAGATATATGAGCAGAAAGATTAACATAGCGAACTCTGCTGGTGTAACAATGGAT
GAAAAAATCGATTTAAATCCACTATATGAAGCAACCCAAGAGGATTTTATTAGTTTTTTTGAAAACGCTGATCTTGTTAC
ATTAAAAAAGTTTATAAAGCATGTAAATGAGCGATAA

Upstream 100 bases:

>100_bases
GAAATGCCAGATGAATCAGATGTTACAACCATAAAGCTTATCGCTCTGGTGTTGAATGTCTCTATTGATGAGTTATTAGA
TGAGAAAGGAGGAGAAGATA

Downstream 100 bases:

>100_bases
TCATTTTTTCGGTATATTACTCAGTTCAAATGATAATTCTTCTTGATTAACCAGATTGCCTTTGGTAACTTTAAATTTAG
CAACATGACATGAGGTGAAA

Product: phage integrase; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQNKIKQLKNYAVYDDIEGFLINKDIRSSSGNSNYMMPSSTRRVSNTRKNYEGDIKQFFSVIKGKDVKSLVPDDLVVSKS
ELSNYVKYLQEKGLVNNSINRKMTSLKMLYTYLEHDYKDYIDLSVFNTVERLKTVTKNWDKTTQTEAERIAQDMYINERQ
KPLMKKLFVKFAIRTSFRVSAILRVRWKDIQLDESTGHYIVTVIDKGSQVVSTGINQVFYEELLQLKEEDDSETELVFQG
LSEQSLRHSLKRSKKRLGIPPERELVLHSFKGVGIDYVYENSGHDLLAAKEQGNHKNTLTTERYMSRKINIANSAGVTMD
EKIDLNPLYEATQEDFISFFENADLVTLKKFIKHVNER

Sequences:

>Translated_358_residues
MQNKIKQLKNYAVYDDIEGFLINKDIRSSSGNSNYMMPSSTRRVSNTRKNYEGDIKQFFSVIKGKDVKSLVPDDLVVSKS
ELSNYVKYLQEKGLVNNSINRKMTSLKMLYTYLEHDYKDYIDLSVFNTVERLKTVTKNWDKTTQTEAERIAQDMYINERQ
KPLMKKLFVKFAIRTSFRVSAILRVRWKDIQLDESTGHYIVTVIDKGSQVVSTGINQVFYEELLQLKEEDDSETELVFQG
LSEQSLRHSLKRSKKRLGIPPERELVLHSFKGVGIDYVYENSGHDLLAAKEQGNHKNTLTTERYMSRKINIANSAGVTMD
EKIDLNPLYEATQEDFISFFENADLVTLKKFIKHVNER
>Mature_358_residues
MQNKIKQLKNYAVYDDIEGFLINKDIRSSSGNSNYMMPSSTRRVSNTRKNYEGDIKQFFSVIKGKDVKSLVPDDLVVSKS
ELSNYVKYLQEKGLVNNSINRKMTSLKMLYTYLEHDYKDYIDLSVFNTVERLKTVTKNWDKTTQTEAERIAQDMYINERQ
KPLMKKLFVKFAIRTSFRVSAILRVRWKDIQLDESTGHYIVTVIDKGSQVVSTGINQVFYEELLQLKEEDDSETELVFQG
LSEQSLRHSLKRSKKRLGIPPERELVLHSFKGVGIDYVYENSGHDLLAAKEQGNHKNTLTTERYMSRKINIANSAGVTMD
EKIDLNPLYEATQEDFISFFENADLVTLKKFIKHVNER

Specific function: Probable recombinase that does not seem to have a role in chromosome dimer resolution per se but rather may have some facilitative role during chromosome partitioning in general

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOPP_BACSU (O34336)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389963.1
- ProteinModelPortal:   O34336
- EnsemblBacteria:   EBBACT00000003192
- GeneID:   936482
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20810
- NMPDR:   fig|224308.1.peg.2086
- GenoList:   BSU20810
- OMA:   VGINSER
- BioCyc:   BSUB:BSU20810-MONOMER
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 41597; Mature: 41597

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: ACT_SITE 304-304

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKIKQLKNYAVYDDIEGFLINKDIRSSSGNSNYMMPSSTRRVSNTRKNYEGDIKQFFS
CCHHHHHHHCCCHHCCCCCEEECCCHHCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHH
VIKGKDVKSLVPDDLVVSKSELSNYVKYLQEKGLVNNSINRKMTSLKMLYTYLEHDYKDY
HHCCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IDLSVFNTVERLKTVTKNWDKTTQTEAERIAQDMYINERQKPLMKKLFVKFAIRTSFRVS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
AILRVRWKDIQLDESTGHYIVTVIDKGSQVVSTGINQVFYEELLQLKEEDDSETELVFQG
HHHHEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
LSEQSLRHSLKRSKKRLGIPPERELVLHSFKGVGIDYVYENSGHDLLAAKEQGNHKNTLT
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCH
TERYMSRKINIANSAGVTMDEKIDLNPLYEATQEDFISFFENADLVTLKKFIKHVNER
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNKIKQLKNYAVYDDIEGFLINKDIRSSSGNSNYMMPSSTRRVSNTRKNYEGDIKQFFS
CCHHHHHHHCCCHHCCCCCEEECCCHHCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHH
VIKGKDVKSLVPDDLVVSKSELSNYVKYLQEKGLVNNSINRKMTSLKMLYTYLEHDYKDY
HHCCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IDLSVFNTVERLKTVTKNWDKTTQTEAERIAQDMYINERQKPLMKKLFVKFAIRTSFRVS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
AILRVRWKDIQLDESTGHYIVTVIDKGSQVVSTGINQVFYEELLQLKEEDDSETELVFQG
HHHHEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
LSEQSLRHSLKRSKKRLGIPPERELVLHSFKGVGIDYVYENSGHDLLAAKEQGNHKNTLT
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCH
TERYMSRKINIANSAGVTMDEKIDLNPLYEATQEDFISFFENADLVTLKKFIKHVNER
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377