Click here to switch to the map view.

The map label for this gene is yoqD

Identifier: 16079126

GI number: 16079126

Start: 2199580

End: 2200335

Strand: Reverse

Name: yoqD

Synonym: BSU20670

Alternate gene names: 16079126

Gene position: 2200335-2199580 (Counterclockwise)

Preceding gene: 16079127

Following gene: 16079125

Centisome position: 52.19

GC content: 35.71

Gene sequence:

>756_bases
ATGGAAAGTTATCTAACAGTAATTGAACAGAATGGACAGCTTTTGGTTGACAGCCGTGAAGTGGCAGAGATGGTAGGTAA
GAGACATACAGATTTACTTAGAAGTATTGATGGATATGTAGCGATCTTACTAAACGCAAAATTGCGTTCAGTGGAATTTT
TCTTAGAAAGTACATATAAAGATGCAACTGGTCGCTCATTGAAGCATTTCCATTTAACCCGAAAAGGATGCGATATGGTT
GCTAATAAAATGACTGGTGCTAAAGGGGTATTATTCACAGCTCAATATGTTTCTAAATTTGAAGAAATGGAGAAGGCGTT
AAAAGCAAGACCGTCCCTAATTGATACATATCTAGATATGAATGAAGATGAACGTGCCATTGCTTATTTCACTGAAAGAA
AAGCAAAACGAGAATTGCAGGAGCAATTAACATTGGCTGAACCAAAAGTGGAGAAATATGATCGCTTTCTTAATACAGAT
GGATTAATGAAAATAGGACAAGTGGCAAAAGCAATTGGCATAAAAGGAATGGGCCAAAACAATTTATTTCGCTTTTTGAG
GGAAAATAAAGTTCTTATTGATGGAACAAACAAAAACGCCCCATATCAAAAATATGTAGAAAGAGGATTCTTTCAAGTGA
AGACCCAGGAGACAAGTGTTGGAATTAAAACAATTACTCTTGTTACTCCTAAAGGTGCCGATTTTATTGTTGATCTTCTA
AAGAAACATGGGCACAAAAGAGAAATAGCATCATAG

Upstream 100 bases:

>100_bases
AAATACCGTTATCTAAGATCAGTTGAAGAATTCTTTGAGAGCTATGCTGCAAAGAAGTGATAAAAGATGCATTTTAAATT
AAATGAGACGGAGGTATTTA

Downstream 100 bases:

>100_bases
ATTTGAAAACTTTAGATAAAAGTAAAATTTTAAAGAGAATCGGAGGATGGAAGATGGAGAATAATGTTTTATACGGAGTT
TACAGTACTAGATCACGAAA

Product: DNA-binding protein anti-repressor; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MESYLTVIEQNGQLLVDSREVAEMVGKRHTDLLRSIDGYVAILLNAKLRSVEFFLESTYKDATGRSLKHFHLTRKGCDMV
ANKMTGAKGVLFTAQYVSKFEEMEKALKARPSLIDTYLDMNEDERAIAYFTERKAKRELQEQLTLAEPKVEKYDRFLNTD
GLMKIGQVAKAIGIKGMGQNNLFRFLRENKVLIDGTNKNAPYQKYVERGFFQVKTQETSVGIKTITLVTPKGADFIVDLL
KKHGHKREIAS

Sequences:

>Translated_251_residues
MESYLTVIEQNGQLLVDSREVAEMVGKRHTDLLRSIDGYVAILLNAKLRSVEFFLESTYKDATGRSLKHFHLTRKGCDMV
ANKMTGAKGVLFTAQYVSKFEEMEKALKARPSLIDTYLDMNEDERAIAYFTERKAKRELQEQLTLAEPKVEKYDRFLNTD
GLMKIGQVAKAIGIKGMGQNNLFRFLRENKVLIDGTNKNAPYQKYVERGFFQVKTQETSVGIKTITLVTPKGADFIVDLL
KKHGHKREIAS
>Mature_251_residues
MESYLTVIEQNGQLLVDSREVAEMVGKRHTDLLRSIDGYVAILLNAKLRSVEFFLESTYKDATGRSLKHFHLTRKGCDMV
ANKMTGAKGVLFTAQYVSKFEEMEKALKARPSLIDTYLDMNEDERAIAYFTERKAKRELQEQLTLAEPKVEKYDRFLNTD
GLMKIGQVAKAIGIKGMGQNNLFRFLRENKVLIDGTNKNAPYQKYVERGFFQVKTQETSVGIKTITLVTPKGADFIVDLL
KKHGHKREIAS

Specific function: Unknown

COG id: COG3645

COG function: function code S; Uncharacterized phage-encoded protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOQD_BACSU (O34449)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389949.1
- ProteinModelPortal:   O34449
- EnsemblBacteria:   EBBACT00000003716
- GeneID:   939436
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20670
- NMPDR:   fig|224308.1.peg.2072
- GenoList:   BSU20670
- GeneTree:   EBGT00070000034050
- HOGENOM:   HBG660764
- OMA:   IAYFTER
- BioCyc:   BSUB:BSU20670-MONOMER
- InterPro:   IPR005039
- InterPro:   IPR014054
- InterPro:   IPR019104
- TIGRFAMs:   TIGR02681

Pfam domain/function: PF03374 ANT; PF09669 Phage_pRha

EC number: NA

Molecular weight: Translated: 28593; Mature: 28593

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYLTVIEQNGQLLVDSREVAEMVGKRHTDLLRSIDGYVAILLNAKLRSVEFFLESTYK
CCCHHEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHC
DATGRSLKHFHLTRKGCDMVANKMTGAKGVLFTAQYVSKFEEMEKALKARPSLIDTYLDM
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
NEDERAIAYFTERKAKRELQEQLTLAEPKVEKYDRFLNTDGLMKIGQVAKAIGIKGMGQN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
NLFRFLRENKVLIDGTNKNAPYQKYVERGFFQVKTQETSVGIKTITLVTPKGADFIVDLL
HHHHHHHCCCEEEECCCCCCCHHHHHHCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHH
KKHGHKREIAS
HHCCCCCCCCC
>Mature Secondary Structure
MESYLTVIEQNGQLLVDSREVAEMVGKRHTDLLRSIDGYVAILLNAKLRSVEFFLESTYK
CCCHHEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHC
DATGRSLKHFHLTRKGCDMVANKMTGAKGVLFTAQYVSKFEEMEKALKARPSLIDTYLDM
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
NEDERAIAYFTERKAKRELQEQLTLAEPKVEKYDRFLNTDGLMKIGQVAKAIGIKGMGQN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
NLFRFLRENKVLIDGTNKNAPYQKYVERGFFQVKTQETSVGIKTITLVTPKGADFIVDLL
HHHHHHHCCCEEEECCCCCCCHHHHHHCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHH
KKHGHKREIAS
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377