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The map label for this gene is yocA

Identifier: 16078973

GI number: 16078973

Start: 2085303

End: 2085980

Strand: Direct

Name: yocA

Synonym: BSU19130

Alternate gene names: 16078973

Gene position: 2085303-2085980 (Clockwise)

Preceding gene: 16078971

Following gene: 16078976

Centisome position: 49.47

GC content: 39.82

Gene sequence:

>678_bases
GTGAAGAAAAAGAGAAAAGGCTGTTTCGCTGCTGCGGGTTTTATGATGATTTTTGTCTTTGTCATCGCCTCTTTTTTATT
GGTCCTGCTTTTTTTCAACCGGGATTTAATCAAAAAACTTCCGATCGATACGAAAACGATTGTTTTGGAACGTTTAACCG
ATTACAAACCCTTGGTGGAAGAAGAGCTTGAAAGCCAAGGACTCTCTAATTATACATCACTCATATTAGGCATGATGTAT
CAGGAGTCAAAAGGAAAAGGCAATGATCCCATGCAGTCCTCTGAATCTCTGGGGTTAAAACGCAATGAGATAACAGACCC
TCAACTCAGTGTTAAACAAGGCATCAAGCAATTTACCCTCATGTACAAGACCGGTAAGGAAAAAGGCGTGGATTTGGATA
CCATTATTCAAAGCTACAACATGGGGGCAGGTTACATTGATTTTGTAGCTGAACATGGAGGAACGCATACTGAGGAATTG
GCAAAACAATACTCCGAGCAGCAAGTCAAAAAAAATCCTGATCTGTATACTTGCGGGGGAAATGCGAAAAATTTCCGCTA
TCCGTATTGCTACGGTGATTATACGTATGCAGAAAAAGTAAAAGAAAAAACAAAAACTGTTGAAGAATCTTTGCAGGTTG
CAACACTTGAAACCATGGAATCCAAGGCTCATGAATAA

Upstream 100 bases:

>100_bases
TAAATTTATGTTTCAAATCAGGTTTTTACTTGGTCTGATATACCCTCTTATGTCATAATAAAAAAGGTCATACTGCTCCA
AACATTGAGGGTGAAACACA

Downstream 100 bases:

>100_bases
GAGTCTATCAATTTACTGACAAAAGCCCAAAAATGAATTTGGGCTTTTGCCATGTTTACACGTAAAAAAAGCCATACTGA
GTATGGCTTTTAATAATACG

Product: transposon-related lytic enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKKKRKGCFAAAGFMMIFVFVIASFLLVLLFFNRDLIKKLPIDTKTIVLERLTDYKPLVEEELESQGLSNYTSLILGMMY
QESKGKGNDPMQSSESLGLKRNEITDPQLSVKQGIKQFTLMYKTGKEKGVDLDTIIQSYNMGAGYIDFVAEHGGTHTEEL
AKQYSEQQVKKNPDLYTCGGNAKNFRYPYCYGDYTYAEKVKEKTKTVEESLQVATLETMESKAHE

Sequences:

>Translated_225_residues
MKKKRKGCFAAAGFMMIFVFVIASFLLVLLFFNRDLIKKLPIDTKTIVLERLTDYKPLVEEELESQGLSNYTSLILGMMY
QESKGKGNDPMQSSESLGLKRNEITDPQLSVKQGIKQFTLMYKTGKEKGVDLDTIIQSYNMGAGYIDFVAEHGGTHTEEL
AKQYSEQQVKKNPDLYTCGGNAKNFRYPYCYGDYTYAEKVKEKTKTVEESLQVATLETMESKAHE
>Mature_225_residues
MKKKRKGCFAAAGFMMIFVFVIASFLLVLLFFNRDLIKKLPIDTKTIVLERLTDYKPLVEEELESQGLSNYTSLILGMMY
QESKGKGNDPMQSSESLGLKRNEITDPQLSVKQGIKQFTLMYKTGKEKGVDLDTIIQSYNMGAGYIDFVAEHGGTHTEEL
AKQYSEQQVKKNPDLYTCGGNAKNFRYPYCYGDYTYAEKVKEKTKTVEESLQVATLETMESKAHE

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOCA_BACSU (O34636)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   F69900
- RefSeq:   NP_389794.1
- ProteinModelPortal:   O34636
- EnsemblBacteria:   EBBACT00000003105
- GeneID:   939661
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19130
- NMPDR:   fig|224308.1.peg.1917
- GenoList:   BSU19130
- GeneTree:   EBGT00070000032232
- HOGENOM:   HBG340910
- OMA:   KQHSEDS
- ProtClustDB:   CLSK887409
- BioCyc:   BSUB:BSU19130-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25562; Mature: 25562

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfefc3d4)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKRKGCFAAAGFMMIFVFVIASFLLVLLFFNRDLIKKLPIDTKTIVLERLTDYKPLVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHCCCHHHH
EELESQGLSNYTSLILGMMYQESKGKGNDPMQSSESLGLKRNEITDPQLSVKQGIKQFTL
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHH
MYKTGKEKGVDLDTIIQSYNMGAGYIDFVAEHGGTHTEELAKQYSEQQVKKNPDLYTCGG
HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCC
NAKNFRYPYCYGDYTYAEKVKEKTKTVEESLQVATLETMESKAHE
CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MKKKRKGCFAAAGFMMIFVFVIASFLLVLLFFNRDLIKKLPIDTKTIVLERLTDYKPLVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHCCCHHHH
EELESQGLSNYTSLILGMMYQESKGKGNDPMQSSESLGLKRNEITDPQLSVKQGIKQFTL
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHH
MYKTGKEKGVDLDTIIQSYNMGAGYIDFVAEHGGTHTEELAKQYSEQQVKKNPDLYTCGG
HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCC
NAKNFRYPYCYGDYTYAEKVKEKTKTVEESLQVATLETMESKAHE
CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377