Click here to switch to the map view.

The map label for this gene is yngC

Identifier: 16078880

GI number: 16078880

Start: 1947668

End: 1948264

Strand: Direct

Name: yngC

Synonym: BSU18190

Alternate gene names: 16078880

Gene position: 1947668-1948264 (Clockwise)

Preceding gene: 16078879

Following gene: 255767431

Centisome position: 46.2

GC content: 42.88

Gene sequence:

>597_bases
GTGGGCAGTTTGATAAGCGAAATTTTAACATGGCTGACGAACATGGGATATGCGGGTATTGCGATTGGGTTAATGATTGA
AATCATTCCGAGTGAGATTGTATTAGCTTATGGCGGCTATATGGTATCGGAGGGCACGATTGGATTTATTGGCGCAATTA
TTGCGGGTGTTATCGGGGGCACCATTGCCCAGATCTTTATTTACTGGATCGGTCGCTATGGCGGCAGGCCATTTCTGGAC
AAATACGGGAAGTATTTATTGATTAAAAAGCATCATATCGATATGTCGGAAAACTGGTTTCAGAAATACGGCGCCGGAGT
TGTCTTCTCGGCTCGTTTTATACCGGTTGTCAGACATGCCATATCCATTCCGGCAGGTATTGCCAGAATGCCTTTTCTCA
AATTTGTGGTACTGACTGTGCTTGCTATCATTCCATGGTCTATCCTGTTTGTTTATTTAGGCATACAGCTAGGAAGCCAG
TGGGATGATGTTGAGAATATAGCAGGCACTTATACAACACCGATTATGATATTGGCTGTTGTCGTGATAGCCCTTTATTT
TGTGATTAAGAAACGTACAGCCATATTTAAACGATAG

Upstream 100 bases:

>100_bases
ACGGGAAACGAAAGAAATGCTGCGGTAAAAAAATTGTAACCATCTTGCTCGTCAATCAGTCATATAATAGTGAAAAAGAT
TAGGACAGGTTGTGAAGAAT

Downstream 100 bases:

>100_bases
CTAGCGGATATGCATAGGGGTGACTGACGCTCCCCTATGCATATTTTTTTACTTGCGATGTTGATTTGCCAGCTTCAGAT
TCTCCGCTAAAAATGCGACA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MGSLISEILTWLTNMGYAGIAIGLMIEIIPSEIVLAYGGYMVSEGTIGFIGAIIAGVIGGTIAQIFIYWIGRYGGRPFLD
KYGKYLLIKKHHIDMSENWFQKYGAGVVFSARFIPVVRHAISIPAGIARMPFLKFVVLTVLAIIPWSILFVYLGIQLGSQ
WDDVENIAGTYTTPIMILAVVVIALYFVIKKRTAIFKR

Sequences:

>Translated_198_residues
MGSLISEILTWLTNMGYAGIAIGLMIEIIPSEIVLAYGGYMVSEGTIGFIGAIIAGVIGGTIAQIFIYWIGRYGGRPFLD
KYGKYLLIKKHHIDMSENWFQKYGAGVVFSARFIPVVRHAISIPAGIARMPFLKFVVLTVLAIIPWSILFVYLGIQLGSQ
WDDVENIAGTYTTPIMILAVVVIALYFVIKKRTAIFKR
>Mature_197_residues
GSLISEILTWLTNMGYAGIAIGLMIEIIPSEIVLAYGGYMVSEGTIGFIGAIIAGVIGGTIAQIFIYWIGRYGGRPFLDK
YGKYLLIKKHHIDMSENWFQKYGAGVVFSARFIPVVRHAISIPAGIARMPFLKFVVLTVLAIIPWSILFVYLGIQLGSQW
DDVENIAGTYTTPIMILAVVVIALYFVIKKRTAIFKR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNGC_BACSU (O31823)

Other databases:

- EMBL:   AL009126
- PIR:   H69892
- RefSeq:   NP_389701.1
- ProteinModelPortal:   O31823
- EnsemblBacteria:   EBBACT00000002818
- GeneID:   939567
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18190
- NMPDR:   fig|224308.1.peg.1822
- GenoList:   BSU18190
- GeneTree:   EBGT00070000031919
- HOGENOM:   HBG657460
- OMA:   EIVLAYG
- ProtClustDB:   CLSK887364
- BioCyc:   BSUB:BSU18190-MONOMER
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 21927; Mature: 21795

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf006f80)-; HASH(0xf015438)-; HASH(0xebf5e88)-; HASH(0xeb5f844)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLISEILTWLTNMGYAGIAIGLMIEIIPSEIVLAYGGYMVSEGTIGFIGAIIAGVIGG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHH
TIAQIFIYWIGRYGGRPFLDKYGKYLLIKKHHIDMSENWFQKYGAGVVFSARFIPVVRHA
HHHHHHHHHHHHCCCCHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEHHHHHHHHHHH
ISIPAGIARMPFLKFVVLTVLAIIPWSILFVYLGIQLGSQWDDVENIAGTYTTPIMILAV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHH
VVIALYFVIKKRTAIFKR
HHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
GSLISEILTWLTNMGYAGIAIGLMIEIIPSEIVLAYGGYMVSEGTIGFIGAIIAGVIGG
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHH
TIAQIFIYWIGRYGGRPFLDKYGKYLLIKKHHIDMSENWFQKYGAGVVFSARFIPVVRHA
HHHHHHHHHHHHCCCCHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEHHHHHHHHHHH
ISIPAGIARMPFLKFVVLTVLAIIPWSILFVYLGIQLGSQWDDVENIAGTYTTPIMILAV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHH
VVIALYFVIKKRTAIFKR
HHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377