Click here to switch to the map view.

The map label for this gene is yncB

Identifier: 16078825

GI number: 16078825

Start: 1895378

End: 1896013

Strand: Reverse

Name: yncB

Synonym: BSU17620

Alternate gene names: 16078825

Gene position: 1896013-1895378 (Counterclockwise)

Preceding gene: 16078827

Following gene: 255767416

Centisome position: 44.98

GC content: 38.99

Gene sequence:

>636_bases
ATGAAGAAGATTTTGATCAGTATGATCGCAATCGTTTTAAGTATTACTTTGGCAGCTTGCGGATCAAATCACGCAGCCAA
AAACCATTCAGATTCTAATGGGACGGAGCAAGTCTCTCAAGATACTCACTCTAATGAATATAATCAGACAGAACAAAAGG
CTGGCACGCCTCATTCAAAAAATCAGAAGAAATTGGTCAATGTTACATTAGATAGAGCAATAGATGGAGATACGATTAAG
GTTATTTACAACGGAAAGAAAGACACAGTTCGCTACTTGCTCGTTGATACACCTGAGACGAAGAAACCAAATTCTTGTGT
TCAACCATACGGTGAGGATGCGTCGAAACGAAATAAAGAATTGGTCAACAGCGGTAAGCTACAGCTGGAATTTGATAAAG
GCGATCGCAGAGATAAGTATGGAAGACTGTTAGCATACGTTTATGTTGACGGCAAATCTGTTCAAGAGACATTATTGAAA
GAGGGATTGGCCAGAGTAGCATATGTATATGAGCCTAACACAAAATACATAGACCAATTCAGACTAGATGAGCAAGAAGC
AAAATCAGATAAACTGTCAATTTGGAGTAAGAGCGGTTATGTGACGAACAGAGGATTTAATGGCTGTGTGAAATAG

Upstream 100 bases:

>100_bases
TATAAGTTCCCTTGAAGTTTTCCATTCACAAAAAATGTCCATATCGTTATAATGATGATGTTTAATCGCGAAAAGAGAAA
ATGATAAAGAGGGAATCAAT

Downstream 100 bases:

>100_bases
AAAAACACTGTTTGTTAAAAAAAGCAGCAAACCTAGCAGAATGCAGTTTCCAAAGAATGAGAAAGAGATGATGGAGAGTC
TAGTTCCATTCTGCTTAACA

Product: DNA nuclease, lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKKILISMIAIVLSITLAACGSNHAAKNHSDSNGTEQVSQDTHSNEYNQTEQKAGTPHSKNQKKLVNVTLDRAIDGDTIK
VIYNGKKDTVRYLLVDTPETKKPNSCVQPYGEDASKRNKELVNSGKLQLEFDKGDRRDKYGRLLAYVYVDGKSVQETLLK
EGLARVAYVYEPNTKYIDQFRLDEQEAKSDKLSIWSKSGYVTNRGFNGCVK

Sequences:

>Translated_211_residues
MKKILISMIAIVLSITLAACGSNHAAKNHSDSNGTEQVSQDTHSNEYNQTEQKAGTPHSKNQKKLVNVTLDRAIDGDTIK
VIYNGKKDTVRYLLVDTPETKKPNSCVQPYGEDASKRNKELVNSGKLQLEFDKGDRRDKYGRLLAYVYVDGKSVQETLLK
EGLARVAYVYEPNTKYIDQFRLDEQEAKSDKLSIWSKSGYVTNRGFNGCVK
>Mature_211_residues
MKKILISMIAIVLSITLAACGSNHAAKNHSDSNGTEQVSQDTHSNEYNQTEQKAGTPHSKNQKKLVNVTLDRAIDGDTIK
VIYNGKKDTVRYLLVDTPETKKPNSCVQPYGEDASKRNKELVNSGKLQLEFDKGDRRDKYGRLLAYVYVDGKSVQETLLK
EGLARVAYVYEPNTKYIDQFRLDEQEAKSDKLSIWSKSGYVTNRGFNGCVK

Specific function: Shows DNase activity on double strand DNA

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNCB_BACSU (P94492)

Other databases:

- EMBL:   U66480
- EMBL:   AL009126
- PIR:   D69888
- RefSeq:   NP_389644.1
- HSSP:   P00644
- ProteinModelPortal:   P94492
- SMR:   P94492
- EnsemblBacteria:   EBBACT00000000437
- GeneID:   939569
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17620
- NMPDR:   fig|224308.1.peg.1766
- GenoList:   BSU17620
- GeneTree:   EBGT00050000000321
- HOGENOM:   HBG752546
- OMA:   NCEREAR
- ProtClustDB:   CLSK409325
- BioCyc:   BSUB:BSU17620-MONOMER
- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071
- Gene3D:   G3DSA:2.40.50.90
- SMART:   SM00318

Pfam domain/function: PF00565 SNase; SSF50199 Staphylococal_nuclease_OB-fold

EC number: NA

Molecular weight: Translated: 23684; Mature: 23684

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS01123 TNASE_1; PS01284 TNASE_2; PS50830 TNASE_3; PS00013 PROKAR_LIPOPROTEIN

Important sites: ACT_SITE 91-91 ACT_SITE 99-99 ACT_SITE 142-142

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILISMIAIVLSITLAACGSNHAAKNHSDSNGTEQVSQDTHSNEYNQTEQKAGTPHSK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCC
NQKKLVNVTLDRAIDGDTIKVIYNGKKDTVRYLLVDTPETKKPNSCVQPYGEDASKRNKE
CCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LVNSGKLQLEFDKGDRRDKYGRLLAYVYVDGKSVQETLLKEGLARVAYVYEPNTKYIDQF
HHCCCCEEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHEEEEECCCCHHHHHH
RLDEQEAKSDKLSIWSKSGYVTNRGFNGCVK
CCCHHHCCCCCEEEEECCCEEECCCCCCCCC
>Mature Secondary Structure
MKKILISMIAIVLSITLAACGSNHAAKNHSDSNGTEQVSQDTHSNEYNQTEQKAGTPHSK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCC
NQKKLVNVTLDRAIDGDTIKVIYNGKKDTVRYLLVDTPETKKPNSCVQPYGEDASKRNKE
CCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LVNSGKLQLEFDKGDRRDKYGRLLAYVYVDGKSVQETLLKEGLARVAYVYEPNTKYIDQF
HHCCCCEEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHEEEEECCCCHHHHHH
RLDEQEAKSDKLSIWSKSGYVTNRGFNGCVK
CCCHHHCCCCCEEEEECCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377