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The map label for this gene is ylqH

Identifier: 16078671

GI number: 16078671

Start: 1679977

End: 1680258

Strand: Direct

Name: ylqH

Synonym: BSU16080

Alternate gene names: 16078671

Gene position: 1679977-1680258 (Clockwise)

Preceding gene: 16078670

Following gene: 16078672

Centisome position: 39.85

GC content: 41.84

Gene sequence:

>282_bases
ATGAAAGAGCAGACACCGATCAGAAAAGCTGTTGCTCTCCATTATGACGAACAAAAAGACAAGGCGCCGAGAGTGATTGC
CACAGGGAAGGGCCATGTAGCTGACAACATTATAAAAGAAGCGAAAAAAGCAGGGGTCCCGATTCAAGAAGATCGGACCC
TTGTCGAATTAATGCGCCATTTGACGGTAGATGATCAAATTCCTGAAGCTCTTTATGAAACGGTAGCCGAGATTTTTTCA
TTCATTTACAAATTGGACGAAAGCGTAAAAAACAAAAAATAG

Upstream 100 bases:

>100_bases
TTTCAGGGGTAAACGCTAAAAAAAGGGTTCACACCGAAGAAAAGGCTTCAATCGATCAATATATAACAAGTATCAGTGAT
CAGGAAGTGGATGTGAAAAT

Downstream 100 bases:

>100_bases
CTAAAATATTCCCCATCCTTCTTTGAAATTTATGTTTTTAATAAAGTAAAAGTTTGAATGTTTAGAAGGATTAAAAGATT
TTGCATCGAACTGTAGACAA

Product: flagellar biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHLTVDDQIPEALYETVAEIFS
FIYKLDESVKNKK

Sequences:

>Translated_93_residues
MKEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHLTVDDQIPEALYETVAEIFS
FIYKLDESVKNKK
>Mature_93_residues
MKEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHLTVDDQIPEALYETVAEIFS
FIYKLDESVKNKK

Specific function: Required For Formation Of The Rod Structure In The Basal Body Of The Flagellar Apparatus. Together With Flii And Flih, May Constitute The Export Apparatus Of Flagellin. [C]

COG id: COG2257

COG function: function code S; Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane. [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): YLQH_BACSU (O34867)

Other databases:

- EMBL:   AJ000975
- EMBL:   AL009126
- PIR:   H69880
- RefSeq:   NP_389490.1
- ProteinModelPortal:   O34867
- SMR:   O34867
- EnsemblBacteria:   EBBACT00000003031
- GeneID:   938163
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16080
- NMPDR:   fig|224308.1.peg.1610
- GenoList:   BSU16080
- GeneTree:   EBGT00050000002522
- HOGENOM:   HBG393741
- OMA:   HLSNFLR
- ProtClustDB:   CLSK887302
- BioCyc:   BSUB:BSU16080-MONOMER
- GO:   GO:0016020
- InterPro:   IPR004683
- InterPro:   IPR006135
- TIGRFAMs:   TIGR00789

Pfam domain/function: PF01312 Bac_export_2

EC number: NA

Molecular weight: Translated: 10603; Mature: 10603

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRH
CCCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LTVDDQIPEALYETVAEIFSFIYKLDESVKNKK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRH
CCCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LTVDDQIPEALYETVAEIFSFIYKLDESVKNKK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377