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The map label for this gene is rpe

Identifier: 16078642

GI number: 16078642

Start: 1654004

End: 1654657

Strand: Direct

Name: rpe

Synonym: BSU15790

Alternate gene names: 16078642

Gene position: 1654004-1654657 (Clockwise)

Preceding gene: 16078641

Following gene: 16078643

Centisome position: 39.24

GC content: 46.02

Gene sequence:

>654_bases
ATGATAAAGGTTGCACCATCTATTCTTTCCGCTGATTTTGCCGCTTTAGGCAATGAGATTAAAGATGTAGAAAAAGGCGG
AGCCGATTGTATTCATATTGATGTTATGGACGGCCATTTTGTCCCGAATATCACAATCGGTCCGCTGATTGTAGAAGCGG
TCCGGCCGGTAACGGATCTGCCGCTTGATGTCCATTTAATGATAGAAGAGCCGGATCGTTATATCCCGGCTTTTGCGAAA
GCAGGCGCAGATATCCTGTCTGTGCATGCTGAGGCATGTCCGCACCTGCACCGTACCATCCAGCTCATTAAAGAGCAAGG
AGTGAAGGCCGGAGTAGTTCTAAACCCGCATACCCCTGTACAAGTCATCGAACATGTTTTCGACGATCTTGATCTTGTTC
TTTTAATGACGGTGAACCCGGGCTTCGGCGGGCAGAAATTTATTCATTCAGTCCTTCCTAAAATAAAAGAGGTTAAGCGA
ATGGCGGATGAAAAAGGAAAAAAAGATCTGTTAATTGAAGTAGACGGCGGCGTCAACAAAGAAACCGCTCCGCTCGTCAT
TGAAGCGGGCGCAAATTTACTCGTTGCCGGTTCAGCTGTTTATGGCCAGTCTGACCGCAAAAAAGCAATTTCTGAAATCA
GAGGAAGTAAATAA

Upstream 100 bases:

>100_bases
AAACAAGCTGTTGAAGACGGGGAATTAAAGCAGTATCGCTATGACCATTATGTTGAATTTATGACGGAGATTAAAGACAG
AAAGCCGAGGTATTAGCATA

Downstream 100 bases:

>100_bases
GCAGCTTTAGAAAAGAGCTGGGCATACAATAGCCTAAGCTCTTTTTCCTGTATGCAGAGAAAGGAATCAGAGATGAAAAC
AATTAATATCGTTGCGGGAG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAK
AGADILSVHAEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKR
MADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK

Sequences:

>Translated_217_residues
MIKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAK
AGADILSVHAEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKR
MADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK
>Mature_217_residues
MIKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAK
AGADILSVHAEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKR
MADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=40.6542056074766, Blast_Score=164, Evalue=8e-41,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=38.785046728972, Blast_Score=154, Evalue=8e-38,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=32.5443786982249, Blast_Score=97, Evalue=7e-21,
Organism=Escherichia coli, GI1789788, Length=213, Percent_Identity=52.112676056338, Blast_Score=226, Evalue=7e-61,
Organism=Escherichia coli, GI1790523, Length=199, Percent_Identity=38.1909547738693, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1790754, Length=208, Percent_Identity=31.7307692307692, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17552948, Length=218, Percent_Identity=39.4495412844037, Blast_Score=158, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=42.4107142857143, Blast_Score=177, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=39.906103286385, Blast_Score=166, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPE_BACSU (O34557)

Other databases:

- EMBL:   Y13937
- EMBL:   AL009126
- PIR:   B69879
- RefSeq:   NP_389461.1
- ProteinModelPortal:   O34557
- SMR:   O34557
- EnsemblBacteria:   EBBACT00000001465
- GeneID:   936393
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15790
- NMPDR:   fig|224308.1.peg.1581
- GenoList:   BSU15790
- GeneTree:   EBGT00050000000938
- HOGENOM:   HBG571751
- OMA:   MLDRRGC
- PhylomeDB:   O34557
- ProtClustDB:   PRK05581
- BioCyc:   BSUB:BSU15790-MONOMER
- BRENDA:   5.1.3.1
- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR11749
- PIRSF:   PIRSF001461
- TIGRFAMs:   TIGR01163

Pfam domain/function: PF00834 Ribul_P_3_epim; SSF51366 RibP_bind_barrel

EC number: =5.1.3.1

Molecular weight: Translated: 23334; Mature: 23334

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDL
CCEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHCC
PLDVHLMIEEPDRYIPAFAKAGADILSVHAEACPHLHRTIQLIKEQGVKAGVVLNPHTPV
CCEEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHH
QVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNK
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
ETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK
CCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MIKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDL
CCEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHCC
PLDVHLMIEEPDRYIPAFAKAGADILSVHAEACPHLHRTIQLIKEQGVKAGVVLNPHTPV
CCEEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHH
QVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNK
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
ETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK
CCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377