Click here to switch to the map view.

The map label for this gene is ylmE

Identifier: 16078602

GI number: 16078602

Start: 1610170

End: 1610862

Strand: Direct

Name: ylmE

Synonym: BSU15380

Alternate gene names: 16078602

Gene position: 1610170-1610862 (Clockwise)

Preceding gene: 16078601

Following gene: 255767357

Centisome position: 38.2

GC content: 45.31

Gene sequence:

>693_bases
TTGCGTGTTGTTGATAATTTACGACATATAAACGAACGAATAAACGAAGCATGTAACAGATCGGGCCGCAGCTCCGATGA
AGTTACGGTTATTGCAGTCACAAAATATGTATCACCTGAAAGAGCACAGGAGGCAGTAGATGCTGGCATCACCTGCCTCG
GAGAGAATCGGGATGCGGAACTGCTCCGCAAACAGGAATTGATGAAAGGGAATCCGGAATGGCATTTTATCGGCAGTCTG
CAATCAAGAAAAGCAAAATCTGTCGTCAATTCGGTTTCCTATATCCATTCCCTAGACCGGCTCTCATTAGCGAAAGAAAT
TGAAAAACGGGCTGAAGGTACTGTACGATGCTTTGTGCAGGTCAATACCTCTCTTGAGCCTTCTAAACATGGCATGAAAA
AAGAAGAAGTCATTCCATTCATACAGGAGCTTTCCGGTTTCGAACATATCCTTGTTGCCGGGCTGATGACAATGGCTCCG
CTGACTGATGATCAAGATCAGATCAGAAGCTGTTTCAGGTCGCTGAGAGAACTCCGTGACCAGGTTCAGAAGCTGAACCA
GCCGAACGCTCCGTGTACTGAACTGTCGATGGGCATGTCAAATGATTTTGAAATTGCAATTGAAGAAGGAGCTACTTATA
TTAGAATCGGCTCATCGTTAGTCGGAAATGAAACAGGGGGTGTACAGCAATGA

Upstream 100 bases:

>100_bases
CACGGAAAGCGAGCCGTCTCTTTTCTATTCTCATCGCCGCGATCAGGGGAAAACTGGACGGATGATGTCCTTTATCGGAA
TGAAGGAGGCATAAAAGATC

Downstream 100 bases:

>100_bases
GTATGAAAAATAAACTGAAAAACTTTTTCTCAATGGAAGATGAAGAATACGAATATGAATATATTGAGACAGAGCGGGAA
TCTCATGAGGAGCATGAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSL
QSRKAKSVVNSVSYIHSLDRLSLAKEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAP
LTDDQDQIRSCFRSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGNETGGVQQ

Sequences:

>Translated_230_residues
MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSL
QSRKAKSVVNSVSYIHSLDRLSLAKEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAP
LTDDQDQIRSCFRSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGNETGGVQQ
>Mature_230_residues
MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSL
QSRKAKSVVNSVSYIHSLDRLSLAKEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAP
LTDDQDQIRSCFRSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGNETGGVQQ

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family

Homologues:

Organism=Homo sapiens, GI6005842, Length=233, Percent_Identity=34.3347639484979, Blast_Score=105, Evalue=4e-23,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=234, Percent_Identity=28.6324786324786, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=237, Percent_Identity=31.6455696202532, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=29.5833333333333, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLME_BACSU (O31727)

Other databases:

- EMBL:   AL009126
- PIR:   E69876
- RefSeq:   NP_389421.1
- ProteinModelPortal:   O31727
- SMR:   O31727
- EnsemblBacteria:   EBBACT00000000585
- GeneID:   940117
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15380
- NMPDR:   fig|224308.1.peg.1540
- GenoList:   BSU15380
- GeneTree:   EBGT00050000001616
- HOGENOM:   HBG289671
- OMA:   ACARVGR
- PhylomeDB:   O31727
- ProtClustDB:   CLSK887274
- BioCyc:   BSUB:BSU15380-MONOMER
- InterPro:   IPR001608
- InterPro:   IPR011078
- PANTHER:   PTHR10146
- PIRSF:   PIRSF004848
- TIGRFAMs:   TIGR00044

Pfam domain/function: PF01168 Ala_racemase_N

EC number: NA

Molecular weight: Translated: 25705; Mature: 25705

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCEEECCCCCHH
LLRKQELMKGNPEWHFIGSLQSRKAKSVVNSVSYIHSLDRLSLAKEIEKRAEGTVRCFVQ
HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
VNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRD
ECCCCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGNETGGVQQ
HHHHCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEECCHHHCCCCCCCCC
>Mature Secondary Structure
MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCEEECCCCCHH
LLRKQELMKGNPEWHFIGSLQSRKAKSVVNSVSYIHSLDRLSLAKEIEKRAEGTVRCFVQ
HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
VNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRD
ECCCCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGNETGGVQQ
HHHHCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEECCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377