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The map label for this gene is ykoV

Identifier: 16078406

GI number: 16078406

Start: 1406357

End: 1407292

Strand: Reverse

Name: ykoV

Synonym: BSU13410

Alternate gene names: 16078406

Gene position: 1407292-1406357 (Counterclockwise)

Preceding gene: 50812223

Following gene: 16078405

Centisome position: 33.38

GC content: 45.19

Gene sequence:

>936_bases
ATGAATCGTACTCCTTCTCTTCACACTAAAGAAAAAAAGGGGTTTATCGATATGCATACAATGTGGAAGGGATCGATCAG
CTTCGGATTAGTAAACATCCCCATCAAGCTATATGCGGCCACAGAAGATAAAGATATTAAACTGCGCAGCCTCCATAAAG
AGGATCACGCACCAATCAAATACGAGAAAGTTTGCACAAATTGCGAAAAAACTCTTAGTCCTGATGAAATTGTGAAGGGA
TATGAATATGTAAAAGGAAAATATGTAGTGCTGACAGACGAAGATTTAAAAAGCTTAAAACAGGAGCATGAGGAGAAAGC
AGTTGAGATTGTTGACTTTGTTCAGCTTCAGGAAATTGATCCGATTTATTTTAACCGCTCCTACTTTGTCGGCCCCGGGG
ATAATGGGACGAAGGCCTATACCCTGCTGCGTGAGGCGCTGCGCTCAACCGGAAAGATCGGTATCGCCAATATGACAATC
AGGTCAAAGCAGCAGCTGGCGATTCTCCGCGTTTATGAAAATTGTATCGTCATGGAGTCTATCCATTATCCCGATGAGGT
CAGAAGCGCCGCTCAAGTCCCAGGTGTACCTGATCAATCGAATGTAAACGATAAGGAACTGCAAACTGCTATCACATTAA
TAGATGAACTGACTGCTAAGTTTGAGCCTGAGAAATATGAAGACACGTACCGACAGGCGCTGCTGCAAAGAGTCAACGAC
AAGCTAGAAAATAAAGAAACGGCTGTCACTCCTGATAAAGCGCCACCTCGTGAAGATGTCATTGACCTGGTAAGCGCTCT
GCAAGCCAGCATCGACAGAACCAGAAGGCCGAACCGGGAGACACCGGCTGCCGCACCTGCACAAGCCGCTGAACCGAAAG
GAGCCGGAGATAAAAAACAAAAAACAACTAGAAAAAAAGCCTCCGGCACATCATAG

Upstream 100 bases:

>100_bases
TTTCAGCAGGCCAATACCTCCGGAACAATTCGAACAATTCATTATTGAACAGCCGTCGCAATAACAGCGCCGGCTTTTTT
TCACCCATAAGTTACTACAC

Downstream 100 bases:

>100_bases
CGCATGGCGTTTACCATGCAGCCGGTCTTAACTTCGTCACCGCCAATCGGAGCAGAATGGCGTTACGAAGTAAAATATGA
TGGGTACCGCTGTATTCTCC

Product: ATP-dependent DNA ligase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIKYEKVCTNCEKTLSPDEIVKG
YEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQEIDPIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTI
RSKQQLAILRVYENCIVMESIHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVND
KLENKETAVTPDKAPPREDVIDLVSALQASIDRTRRPNRETPAAAPAQAAEPKGAGDKKQKTTRKKASGTS

Sequences:

>Translated_311_residues
MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIKYEKVCTNCEKTLSPDEIVKG
YEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQEIDPIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTI
RSKQQLAILRVYENCIVMESIHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVND
KLENKETAVTPDKAPPREDVIDLVSALQASIDRTRRPNRETPAAAPAQAAEPKGAGDKKQKTTRKKASGTS
>Mature_311_residues
MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIKYEKVCTNCEKTLSPDEIVKG
YEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQEIDPIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTI
RSKQQLAILRVYENCIVMESIHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVND
KLENKETAVTPDKAPPREDVIDLVSALQASIDRTRRPNRETPAAAPAQAAEPKGAGDKKQKTTRKKASGTS

Specific function: Could be involved in DNA repair during spore germination

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Spore core. Note=Expressed in the center of the spore core, presumably with the nucleoid

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKOV_BACSU (O34859)

Other databases:

- EMBL:   AL009126
- PIR:   H69860
- RefSeq:   NP_389224.1
- ProteinModelPortal:   O34859
- EnsemblBacteria:   EBBACT00000001301
- GeneID:   939375
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13410
- NMPDR:   fig|224308.1.peg.1343
- GenoList:   BSU13410
- GeneTree:   EBGT00050000002641
- HOGENOM:   HBG492008
- OMA:   SARFDAN
- ProtClustDB:   CLSK873251
- BioCyc:   BSUB:BSU13410-MONOMER
- HAMAP:   MF_01875
- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194
- PIRSF:   PIRSF006493
- SMART:   SM00559
- TIGRFAMs:   TIGR02772

Pfam domain/function: PF02735 Ku; SSF100939 SPOC-like

EC number: NA

Molecular weight: Translated: 35065; Mature: 35065

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIK
CCCCCCCCCHHHCCCEEEHHHCCCCCEEEEEECCEEEEEECCCCCCHHHHHCCCCCCCCH
YEKVCTNCEKTLSPDEIVKGYEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQEID
HHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTIRSKQQLAILRVYENCIVMES
CEEECCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
IHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVND
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KLENKETAVTPDKAPPREDVIDLVSALQASIDRTRRPNRETPAAAPAQAAEPKGAGDKKQ
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
KTTRKKASGTS
HHHHHHCCCCC
>Mature Secondary Structure
MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIK
CCCCCCCCCHHHCCCEEEHHHCCCCCEEEEEECCEEEEEECCCCCCHHHHHCCCCCCCCH
YEKVCTNCEKTLSPDEIVKGYEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQEID
HHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTIRSKQQLAILRVYENCIVMES
CEEECCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
IHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVND
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KLENKETAVTPDKAPPREDVIDLVSALQASIDRTRRPNRETPAAAPAQAAEPKGAGDKKQ
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
KTTRKKASGTS
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377