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The map label for this gene is ykoG

Identifier: 16078390

GI number: 16078390

Start: 1391953

End: 1392639

Strand: Direct

Name: ykoG

Synonym: BSU13250

Alternate gene names: 16078390

Gene position: 1391953-1392639 (Clockwise)

Preceding gene: 16078385

Following gene: 16078391

Centisome position: 33.02

GC content: 46.72

Gene sequence:

>687_bases
TTGGAAAAAGGACACATATTAATTGTGGAAGATGAAGAAAAAATCGCCAGGGTTCTTCAGCTTGAATTGGAATATGAAGG
ATACAGCGTCACGATCAAACACAATGGCACAGAAGGTCTTGATGCGGCAGCGGAAGGCGGGTATTCCTTGGTGCTTCTTG
ATGTCATGCTTCCGGGGCTTAGCGGACTGGAAGTGCTGCGCCGCTTGAGAAAAACGGATTCGCAGACACCGGTCATATTA
TTAACGGCGCGAGACAGTATTCCTGATAAGGTAACAGGTCTGGACATCGGTGCAAATGACTATGTCACCAAGCCGTTTGA
AATCGAGGAATTGCTTGCGAGAATCAGGGCGGCGCTGCGGCAAAATGGAACAAAAACTGAAGATATCGGCACCTTTCTTA
CATATGACGATTTGCGGGTGAACGAAAAAACCCGTGAAGTGAGACGCGGAGACAAAGAGGTGGAATTAACGCCGCGGGAA
TTTGATCTGCTCGTCTATATGCTAAAGCATCCGCAGCAAGTGCTGACACGGGAGCAAATTCTAAGCTCAGTATGGGGATT
TGATTATATCGGTGATACAAATGTCGTGGACGTCTACATAAGATACATCAGAAAAAAACTGGACTATCCTTACGAAAAAC
AGCTGATCCATACGATTCGCGGGGTCGGCTATGCCATTAAGGGGTAA

Upstream 100 bases:

>100_bases
TATACAATTTTTTATTTTGACATCATAATAGATGATAAGAATCATTTTGTAAACAACGAAATCATTTTTTTCATATAGGG
ACGGGAGAGGATGGTCAAAT

Downstream 100 bases:

>100_bases
ACGATGAAGCTGAAGACCAAGATTCATCTATACACTTCGATATCACTGTTGATTTTATTAATTTTGGTTCATACCGCAGT
ATATCTCATTTTTTCGTCTG

Product: two-component response regulator YkoH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEVLRRLRKTDSQTPVIL
LTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPRE
FDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG

Sequences:

>Translated_228_residues
MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEVLRRLRKTDSQTPVIL
LTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPRE
FDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG
>Mature_228_residues
MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEVLRRLRKTDSQTPVIL
LTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPRE
FDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG

Specific function: Probable member of the two-component regulatory system ykoH/ykoG

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=42.5339366515837, Blast_Score=180, Evalue=6e-47,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=40.5405405405405, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=36.7713004484305, Blast_Score=146, Evalue=9e-37,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=39.3665158371041, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=39.7321428571429, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=32.6086956521739, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1790860, Length=229, Percent_Identity=35.8078602620087, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=31.981981981982, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=38.5281385281385, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=33.9285714285714, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=29.6803652968037, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790863, Length=235, Percent_Identity=34.8936170212766, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=34.1991341991342, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=31.0043668122271, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788550, Length=122, Percent_Identity=35.2459016393443, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790299, Length=150, Percent_Identity=30.6666666666667, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=32.4561403508772, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788905, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994928, Length=115, Percent_Identity=35.6521739130435, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YKOG_BACSU (O34903)

Other databases:

- EMBL:   AJ002571
- EMBL:   AL009126
- PIR:   C69859
- RefSeq:   NP_389208.1
- ProteinModelPortal:   O34903
- SMR:   O34903
- EnsemblBacteria:   EBBACT00000000074
- GeneID:   936451
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13250
- NMPDR:   fig|224308.1.peg.1327
- GenoList:   BSU13250
- GeneTree:   EBGT00070000031932
- HOGENOM:   HBG753323
- OMA:   IRATESK
- PhylomeDB:   O34903
- ProtClustDB:   CLSK887173
- BioCyc:   BSUB:BSU13250-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00448
- SMART:   SM00862

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 26012; Mature: 26012

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50110 RESPONSE_REGULATORY; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL
CCCCCEEEEECHHHHHHHHHHEEEECCEEEEEEECCCCCCCHHHCCCCEEEEHHHHHCCC
SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR
CHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQI
HCCCCCHHCCCEEEECCEECCHHHHHHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHH
LSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECC
>Mature Secondary Structure
MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL
CCCCCEEEEECHHHHHHHHHHEEEECCEEEEEEECCCCCCCHHHCCCCEEEEHHHHHCCC
SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR
CHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQI
HCCCCCHHCCCEEEECCEECCHHHHHHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHH
LSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377