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The map label for this gene is yjcO

Identifier: 16078258

GI number: 16078258

Start: 1265887

End: 1266348

Strand: Direct

Name: yjcO

Synonym: BSU11930

Alternate gene names: 16078258

Gene position: 1265887-1266348 (Clockwise)

Preceding gene: 255767269

Following gene: 16078259

Centisome position: 30.03

GC content: 43.72

Gene sequence:

>462_bases
ATGACAGATCAAATGATTGCATGGGAGATTGAGGAATGGATTCGTGATTATAAATTCATGCTGCGGGAGATCAAAAGGCT
CAACCGTGTATTAAACAAAGTGGATTTTATTAGCACAAAGCTCACTGCAACATACGGGGAGGAAGCGGGCATGCCAAGGG
GATCAGCAGGCGTCAGTCAGGCAGAATTGCGGCAGATGGACCGAAGAGAAAGGCGGCTTCACAAATATGAATCTATTGTG
CATTACCTGGACAATGCAATGGAACACATTGAAGAAGAAAAGCACCGAATCGTTTACGATTGCATGATGGAAGGCATGAG
CTACACTGCTATTGCAAACCACCTTGATTGCTCCCGGGATACCATCAGAAAGATCAAAACAGCCATAATCGGCAACATCG
TCAATAAAGTCAAAGAAGCCAACTTTCTGCAATATTTGAATTCGTTTAAATCGGCGGTGTAA

Upstream 100 bases:

>100_bases
CAACGTGAAAGAGGTATCGAGGCCCTCAATATATCGCAGAACAAAAAGCAAACAACTGGAATGACACTTACTCTATTTAA
CTATCAGGAGGGAAAGCACT

Downstream 100 bases:

>100_bases
AATGGGGGGCAGGATCGGCGCGGCGGATTATTCCTGCGTCACCACCAATTTCATACAATGAGTAAAACCTCCCAGTGGTA
AGCGAGGATCAACTCAACTG

Product: DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MTDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTATYGEEAGMPRGSAGVSQAELRQMDRRERRLHKYESIV
HYLDNAMEHIEEEKHRIVYDCMMEGMSYTAIANHLDCSRDTIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV

Sequences:

>Translated_153_residues
MTDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTATYGEEAGMPRGSAGVSQAELRQMDRRERRLHKYESIV
HYLDNAMEHIEEEKHRIVYDCMMEGMSYTAIANHLDCSRDTIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV
>Mature_152_residues
TDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTATYGEEAGMPRGSAGVSQAELRQMDRRERRLHKYESIVH
YLDNAMEHIEEEKHRIVYDCMMEGMSYTAIANHLDCSRDTIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJCO_BACSU (O31637)

Other databases:

- EMBL:   AL009126
- PIR:   G69847
- RefSeq:   NP_389075.1
- ProteinModelPortal:   O31637
- EnsemblBacteria:   EBBACT00000000142
- GeneID:   936430
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11930
- NMPDR:   fig|224308.1.peg.1194
- GenoList:   BSU11930
- GeneTree:   EBGT00050000006362
- HOGENOM:   HBG534565
- OMA:   CGANISQ
- ProtClustDB:   CLSK806655
- BioCyc:   BSUB:BSU11930-MONOMER
- InterPro:   IPR013324
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 18052; Mature: 17921

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTATYGEEAGMPRGSAGVSQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AELRQMDRRERRLHKYESIVHYLDNAMEHIEEEKHRIVYDCMMEGMSYTAIANHLDCSRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH
TIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTATYGEEAGMPRGSAGVSQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AELRQMDRRERRLHKYESIVHYLDNAMEHIEEEKHRIVYDCMMEGMSYTAIANHLDCSRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH
TIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377