Click here to switch to the map view.

The map label for this gene is oppB

Identifier: 16078209

GI number: 16078209

Start: 1221594

End: 1222529

Strand: Direct

Name: oppB

Synonym: BSU11440

Alternate gene names: 16078209

Gene position: 1221594-1222529 (Clockwise)

Preceding gene: 16078208

Following gene: 16078210

Centisome position: 28.98

GC content: 44.66

Gene sequence:

>936_bases
TTGCTAAAATATATCGGAAGACGCTTAGTCTATATGATTATCACACTATTTGTGATTGTAACTGTGACATTCTTCTTAAT
GCAAGCAGCACCGGGCGGGCCATTTTCAGGTGAGAAAAAGCTTCCGCCTGAAATTGAAGCAAATTTAAATGCGCATTATG
GCTTGGACAAGCCGCTGTTTGTACAATATGTCAGTTATTTGAAATCAGTTGCAATGTGGGATTTCGGACCGTCATTTAAA
TATAAAGGTCAGAGTGTTAACGACCTGATCAGTTCAGGTTTCCCCGTTTCATTTACTCTTGGAGCAGAAGCTATTCTCCT
CGCTTTAGCGTTAGGTGTATTGTTTGGGGTCATTGCAGCCCTTTACCATAATAAGTGGCAGGATTATACCGTCGCGATTT
TAACGATATTTGGTATTTCGGTTCCGAGCTTTATCATGGCGGCTGTTCTGCAATATGTGTTCTCCATGAAGCTTGGGCTG
TTTCCGGTCGCGGGGTGGGATTCCTGGGCATACACCTTTTTGCCTTCCATCGCACTTGCTTCCATGCCGATGGCGTTTAT
TGCCAGACTTTCCCGTTCAAGCATGATCGAAGTGTTAAACAGTGATTATATCCGCACAGCGAAAGCGAAAGGGCTTTCCC
GCCCAGCGGTTACAGTGCGGCACGCCATTCGAAACGCACTTTTGCCGGTTGTTACATATATGGGCCCGATGGCCGCACAG
GTCTTAACGGGGAGCTTCATTATTGAAACCATTTTTGGGATTCCGGGGCTTGGTGCACACTTCGTCAACAGTATTACAAA
CCGTGATTATACGGTCATTATGGGTGTAACGGTGTTCTTCAGTGTCATCTTGCTATTGTGTGTATTAATCGTAGATGTGT
TATACGGCATTATTGATCCAAGAATCAAGCTTTCCAAAGCAAAGAAAGGAGCCTAG

Upstream 100 bases:

>100_bases
TCTGAAAATAAAAGACCTCAAGGTATATGGGGAGAAAAGCCCCATATACCTTTCTTACTGATGGAGTATAAAAATGTAAA
AACCATGGAGGTGTTCCCCC

Downstream 100 bases:

>100_bases
GCCATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAG
CCTTTCCCTCTGGAAAGATG

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KB

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGPSFK
YKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGL
FPVAGWDSWAYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQ
VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA

Sequences:

>Translated_311_residues
MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGPSFK
YKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGL
FPVAGWDSWAYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQ
VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA
>Mature_311_residues
MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGPSFK
YKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGL
FPVAGWDSWAYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQ
VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=51.4754098360656, Blast_Score=311, Evalue=3e-86,
Organism=Escherichia coli, GI1787053, Length=307, Percent_Identity=38.1107491856677, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=36.7647058823529, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=33.3333333333333, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=29.3956043956044, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=32.0121951219512, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=31.3868613138686, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OPPB_BACSU (P24138)

Other databases:

- EMBL:   X56347
- EMBL:   M57689
- EMBL:   M57689
- EMBL:   AL009126
- PIR:   H69668
- RefSeq:   NP_389026.1
- ProteinModelPortal:   P24138
- EnsemblBacteria:   EBBACT00000001919
- GeneID:   936397
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11440
- NMPDR:   fig|224308.1.peg.1145
- GenoList:   BSU11440
- GeneTree:   EBGT00050000000642
- HOGENOM:   HBG724229
- OMA:   ERLNEAY
- PhylomeDB:   P24138
- ProtClustDB:   CLSK887061
- BioCyc:   BSUB:BSU11440-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 34075; Mature: 34075

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xddbf364)-; HASH(0xdf504f4)-; HASH(0xd90bb78)-; HASH(0xe558034)-; HASH(0xe53d92c)-; HASH(0xe5660dc)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHH
VQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
LYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHH
SMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDP
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RIKLSKAKKGA
CHHHCCCCCCH
>Mature Secondary Structure
MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHH
VQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
LYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHH
SMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDP
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RIKLSKAKKGA
CHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377