Click here to switch to the map view.

The map label for this gene is yhjR

Identifier: 16078125

GI number: 16078125

Start: 1135699

End: 1136136

Strand: Reverse

Name: yhjR

Synonym: BSU10610

Alternate gene names: 16078125

Gene position: 1136136-1135699 (Counterclockwise)

Preceding gene: 16078131

Following gene: 16078124

Centisome position: 26.95

GC content: 47.72

Gene sequence:

>438_bases
TTGCATTACAGCTACTATCCCTATCCGGTGCCATACCGGGAAGATCCTGTTTTGATTCGGAATTTGCAGAAGGCCATCAA
CGGAGAATTCAGTGCTATTCAATGCTACCGCAAGCTTGCCGAACTCGCCCACAGCGATGAGGTCAGAAAACAGATTGAAG
AAATCAGGCGTGACGAGATTCGCCACCTCCGTGAATTTTCCACACTGTATGGTTCAATTACCGGCAAACACATCATGCCG
AAACAAACGGAAGAATGCCCGGACAATTTCACAAGAGGACTGGACGCCGCTTTTAAAGATGAACAAGAAACCGTCGACTT
TTACTTGCGTGCGGCCGAGGAAACGTCAAACTTAAAAGCGAAAGGCGTCTTTACGCGCGCAGCACGTGATGAACAAAATC
ACGCTGTCTGGTTCCTATACTATCTGATGGAACGTTAG

Upstream 100 bases:

>100_bases
GCCTTTTCACATATAAAAAGCTGATTATCTCCGCACATCTCTCCCTGCCCAACATATACTTTTACAGAAGCCCAATTCCT
AAGAATGGAGTTGAATCCCC

Downstream 100 bases:

>100_bases
ATATACCCATTCAGGGTATATGTACATATCCCCTTAGCTAAAAACACACTCCCCTGTTTTTTTCAAATGCAGCCGTGAAA
CATAAAACCATATACTGTCA

Product: electron carrier protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAHSDEVRKQIEEIRRDEIRHLREFSTLYGSITGKHIMP
KQTEECPDNFTRGLDAAFKDEQETVDFYLRAAEETSNLKAKGVFTRAARDEQNHAVWFLYYLMER

Sequences:

>Translated_145_residues
MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAHSDEVRKQIEEIRRDEIRHLREFSTLYGSITGKHIMP
KQTEECPDNFTRGLDAAFKDEQETVDFYLRAAEETSNLKAKGVFTRAARDEQNHAVWFLYYLMER
>Mature_145_residues
MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAHSDEVRKQIEEIRRDEIRHLREFSTLYGSITGKHIMP
KQTEECPDNFTRGLDAAFKDEQETVDFYLRAAEETSNLKAKGVFTRAARDEQNHAVWFLYYLMER

Specific function: Unknown

COG id: COG1633

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHJR_BACSU (O07572)

Other databases:

- EMBL:   Y14081
- EMBL:   AL009126
- PIR:   A69835
- RefSeq:   NP_388942.1
- ProteinModelPortal:   O07572
- SMR:   O07572
- EnsemblBacteria:   EBBACT00000002825
- GeneID:   939352
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10610
- NMPDR:   fig|224308.1.peg.1061
- GenoList:   BSU10610
- GeneTree:   EBGT00050000001650
- HOGENOM:   HBG338691
- OMA:   SAISCYA
- ProtClustDB:   CLSK2752360
- BioCyc:   BSUB:BSU10610-MONOMER
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR003251
- Gene3D:   G3DSA:1.20.1260.10

Pfam domain/function: PF02915 Rubrerythrin; SSF47240 Ferritin/RR_like

EC number: NA

Molecular weight: Translated: 17230; Mature: 17230

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAHSDEVRKQIEEIRRDEI
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RHLREFSTLYGSITGKHIMPKQTEECPDNFTRGLDAAFKDEQETVDFYLRAAEETSNLKA
HHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
KGVFTRAARDEQNHAVWFLYYLMER
HHHHHHHHCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAHSDEVRKQIEEIRRDEI
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RHLREFSTLYGSITGKHIMPKQTEECPDNFTRGLDAAFKDEQETVDFYLRAAEETSNLKA
HHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
KGVFTRAARDEQNHAVWFLYYLMER
HHHHHHHHCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377