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The map label for this gene is yhjH

Identifier: 16078115

GI number: 16078115

Start: 1124438

End: 1124965

Strand: Direct

Name: yhjH

Synonym: BSU10510

Alternate gene names: 16078115

Gene position: 1124438-1124965 (Clockwise)

Preceding gene: 16078114

Following gene: 16078120

Centisome position: 26.67

GC content: 42.8

Gene sequence:

>528_bases
ATGAACACAGATCATACGAAACGCAATCTTTTTGAATTGTATGCGGAGCTCATTCATCAGCAGGAGAAATGGGAGGGGCT
TATTAAAGCCTTTTTATCTGACGAATTGAGGAAGCTGGATGTAGAGCACGGGAGTAAATCTCAATTGACGATGACAGAAA
TTCATGTTCTATCCTGTGTCGGGGACAATGAACCAATTAATGTCACGTCGATAGCAGAAAAAATGAATACGACAAAAGCG
ACTGTATCACGCATCAGCACAAAATTGCTCGGCGCAGGCTTCCTTCACAGAACACAGCTCAGCGATAATAAAAAGGAGGT
CTACTTCCGATTGACGCCTGCTGGAAAAAAGCTGCACAGTTTGCACAAATATTATCATCAGAAGGCTGAACAGCGTTTTC
TGTCATTTTTTGACCGCTATACCGAGGAAGAGATTCTTTTTGCGGAACGGCTGTTTCGGGATCTGGTGACAAAATGGTAT
CCGTCGTCAGAAGAAATTGAAGGGGGGCTTCCTAGCATTTTTAAATAA

Upstream 100 bases:

>100_bases
TTTTCCGTCACCAGCCGAGTATAATTCAATTCGATTGTTTCATCTGTAACAAAACGGTATGATAGAAGAAACAATCGAAT
GAAAAAGGATGGAAAACCCG

Downstream 100 bases:

>100_bases
AAAACACGCACTGCGGTGCGTGTTTTTCGCTTTGTTTCTATCTTTTTCAAGGCTGTAACGTAAATCAGATTTCCTCTTGA
AGAATGAAATTCAAGATGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHGSKSQLTMTEIHVLSCVGDNEPINVTSIAEKMNTTKA
TVSRISTKLLGAGFLHRTQLSDNKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWY
PSSEEIEGGLPSIFK

Sequences:

>Translated_175_residues
MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHGSKSQLTMTEIHVLSCVGDNEPINVTSIAEKMNTTKA
TVSRISTKLLGAGFLHRTQLSDNKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWY
PSSEEIEGGLPSIFK
>Mature_175_residues
MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHGSKSQLTMTEIHVLSCVGDNEPINVTSIAEKMNTTKA
TVSRISTKLLGAGFLHRTQLSDNKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWY
PSSEEIEGGLPSIFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHJH_BACSU (Q796S4)

Other databases:

- EMBL:   AF002191
- EMBL:   Y14081
- EMBL:   AL009126
- PIR:   G69833
- RefSeq:   NP_388932.1
- ProteinModelPortal:   Q796S4
- SMR:   Q796S4
- EnsemblBacteria:   EBBACT00000001296
- GeneID:   939329
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10510
- NMPDR:   fig|224308.1.peg.1051
- GenoList:   BSU10510
- GeneTree:   EBGT00050000001108
- HOGENOM:   HBG344718
- OMA:   EPINVTS
- ProtClustDB:   CLSK887017
- BioCyc:   BSUB:BSU10510-MONOMER
- GO:   GO:0005737
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 20424; Mature: 20424

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHGSKSQLTMTEIHVLSCV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
GDNEPINVTSIAEKMNTTKATVSRISTKLLGAGFLHRTQLSDNKKEVYFRLTPAGKKLHS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
LHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWYPSSEEIEGGLPSIFK
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHGSKSQLTMTEIHVLSCV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
GDNEPINVTSIAEKMNTTKATVSRISTKLLGAGFLHRTQLSDNKKEVYFRLTPAGKKLHS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
LHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWYPSSEEIEGGLPSIFK
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9457850; 9384377