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The map label for this gene is yhgD

Identifier: 16078079

GI number: 16078079

Start: 1089755

End: 1090330

Strand: Direct

Name: yhgD

Synonym: BSU10150

Alternate gene names: 16078079

Gene position: 1089755-1090330 (Clockwise)

Preceding gene: 16078078

Following gene: 16078080

Centisome position: 25.85

GC content: 43.92

Gene sequence:

>576_bases
ATGTCAATAGATCGAAAAAAGCTCATTTTGGAGGCGGCTACAAAGTCTTTCACGCAGTTCGGGTATAAAGCGACGACAAT
GGATCTTGTCGCAAAACTTGCGAACGTGGGGAAGGGAACCATTTATACTTTTTTCAAAAACAAAGAAGAGCTGTTTGACG
AGATTTTCACTACTTTATTAAAGGAAATGAAGCAAAAAGCGGATGAAGCGATGGAGCCGAGCCTTCCGTTCCATGAAAAT
GTGCACAGAGCGCTGTTTGCCATTCTGGAGTTCAGGAAAACACATCAGCTGACGATTAAAATTTTCCAAGAGAATGCCGA
GATTGGTACAATGGCAGTTCAGGAAGTGATCCAGAAAATGGAGCGATCCATCCTGTCTTATATCAAAAGCAAGATTGAAG
ACGGGATCAAAAGCGGCGCAATCAAGCCGTGCGACCCTGAGCTGACAGCCTTTGTGATGCTGAAGCTTTATATCGCGCTC
ATTTTTGACTGGGAAAAACAACACCCCCCGCTTGATAAAGAGACAATTGCGGGACTGCTTGAATTGTATGTTGTCAAAGG
ATTGTCAGCGAACTAG

Upstream 100 bases:

>100_bases
ATTGTGTAAAAAATGATTGAATTGAACAGCAGGTTATGATACATTTGCATATGTACTTAATGACTAAAATGTTCAAACGG
TCAGTTTCGAGGTGAATACA

Downstream 100 bases:

>100_bases
ATAATCCTTTCTCTTTGCAAGAAAATGACCATTTTTTATGATGAGTCAGTTTTAGAATGGAGGCATCAGGATGAACACAA
TACGAAGTCAGTGGAAAGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEMKQKADEAMEPSLPFHEN
VHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKMERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIAL
IFDWEKQHPPLDKETIAGLLELYVVKGLSAN

Sequences:

>Translated_191_residues
MSIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEMKQKADEAMEPSLPFHEN
VHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKMERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIAL
IFDWEKQHPPLDKETIAGLLELYVVKGLSAN
>Mature_190_residues
SIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEMKQKADEAMEPSLPFHENV
HRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKMERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIALI
FDWEKQHPPLDKETIAGLLELYVVKGLSAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHGD_BACSU (P32398)

Other databases:

- EMBL:   M97208
- EMBL:   Y14083
- EMBL:   AL009126
- PIR:   E47045
- RefSeq:   NP_388896.1
- ProteinModelPortal:   P32398
- SMR:   P32398
- EnsemblBacteria:   EBBACT00000001420
- GeneID:   939305
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10150
- NMPDR:   fig|224308.1.peg.1015
- GenoList:   BSU10150
- GeneTree:   EBGT00070000031928
- HOGENOM:   HBG420872
- OMA:   VEIVSFI
- ProtClustDB:   CLSK873239
- BioCyc:   BSUB:BSU10150-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.10.60
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 21794; Mature: 21663

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEHHHCCHHHHHHHHHHHHH
KEMKQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIALIFDWEKQHPPLDKETIAGLL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ELYVVKGLSAN
HHHHHHCCCCC
>Mature Secondary Structure 
SIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEHHHCCHHHHHHHHHHHHH
KEMKQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIALIFDWEKQHPPLDKETIAGLL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ELYVVKGLSAN
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1459957; 9579061; 9384377