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The map label for this gene is yhbD

Identifier: 16077959

GI number: 16077959

Start: 970667

End: 971383

Strand: Direct

Name: yhbD

Synonym: BSU08940

Alternate gene names: 16077959

Gene position: 970667-971383 (Clockwise)

Preceding gene: 255767208

Following gene: 16077960

Centisome position: 23.03

GC content: 40.86

Gene sequence:

>717_bases
ATGCTTTGTTTCGTTTTTGGGCTTAACAACGTAACAGTGTTATGTTACAATGTACCCATCAAAGGAGCTGGACTTATGGA
AGAACAATTAATCTCTAAAAAAGAATTACTTGAAAGAACATCGATTTCATACGGTCAGCTGTATCGATGGAAGCGGAAAA
ACTTAATACCTGAGGAATGGTTTATTCGTAAATCCACATTTACAGGGCAAGAGACGTTTTTTCCGAGAGAGGAGATTTTA
AAACGTATATCAATGATTCAAAAGATGAAAGAAAATTTGTCTTTGGATGAAATGAGGGAAATGCTGTCGCCGAAAATGAA
GGATGTCAGCATGACCGCTGATGAATTGCTTCATAAAGGTTTGGTTTCAAGGCCTGCTCTTGAAGCCTATTCAGAAGACG
GAGGAAGTCCGGTTTTTTCATCCAGCGATTTGCTTTCGCTGTTTGTGCTTGAGGGCCTGCTGCAGTCTGGAAATGTCAGC
CTTGCAGAAGCAAAAATGGCTGCAGAGGTATTAAAGAAGCATGATACTGAAGAGATTGAAAAACAGACGGAGCTGATTGT
GCTCCGCAAGCTCGGTGTCACAACTTGTTTTATAGCGGCTGCGGCGGACAGCATTTTGTTTGAATCATCCGTAAAGGTTG
TGGAACGGGTAGATTTATTAAAAGCTTCAGAGGAATTAAAAACAACATTTATGCAGGAGGGCCATCAATGGATGTAG

Upstream 100 bases:

>100_bases
ATTCTTGTTTATGAAGCGCTGCGCCAGCAAAATTACCGTGATTTAAAATAGTGAAAAACCCGCTCATCGATGATGGGCGG
GTTTTTTTGCGGATGTTGAA

Downstream 100 bases:

>100_bases
TGGAAAAGCTGGTGATAAATGGATCAGGAAGTTCTAAGGGAGGAACATTTCAATCAGTTGAGATTAATGGCAGCGGGACA
GTGGCCGGGGACGTGGAGTG

Product: nucleic acid binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEIL
KRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVS
LAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM

Sequences:

>Translated_238_residues
MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEIL
KRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVS
LAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM
>Mature_238_residues
MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEIL
KRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVS
LAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHBD_BACSU (P97032)

Other databases:

- EMBL:   U58864
- EMBL:   Z93102
- EMBL:   AL009126
- PIR:   G69820
- RefSeq:   NP_388775.1
- ProteinModelPortal:   P97032
- EnsemblBacteria:   EBBACT00000000011
- GeneID:   936214
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08940
- NMPDR:   fig|224308.1.peg.894
- GenoList:   BSU08940
- GeneTree:   EBGT00050000001726
- HOGENOM:   HBG337431
- OMA:   PEEWFIR
- ProtClustDB:   CLSK865447
- BioCyc:   BSUB:BSU08940-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27053; Mature: 27053

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEW
CEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHH
FIRKSTFTGQETFFPREEILKRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKG
HEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
LVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVSLAEAKMAAEVLKKHDTEEIE
HHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
KQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISYGQLYRWKRKNLIPEEW
CEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHH
FIRKSTFTGQETFFPREEILKRISMIQKMKENLSLDEMREMLSPKMKDVSMTADELLHKG
HEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
LVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVSLAEAKMAAEVLKKHDTEEIE
HHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
KQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVDLLKASEELKTTFMQEGHQWM
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9782504; 9384377