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The map label for this gene is yfkH

Identifier: 16077857

GI number: 16077857

Start: 862836

End: 863663

Strand: Direct

Name: yfkH

Synonym: BSU07900

Alternate gene names: 16077857

Gene position: 862836-863663 (Clockwise)

Preceding gene: 16077856

Following gene: 16077859

Centisome position: 20.47

GC content: 45.65

Gene sequence:

>828_bases
ATGAGTTTTTTGAAAGAGCTTTTCAGCAGATACACCCTTCATGAAGGACAAAGTAAATCAGCGGAGCTGGCGTATTTTTT
TCTATTGTCACTGTTTCCGTTTTTGATTTTTATGCTGACGCTCACCGCGTATCTTCCGCTTTCTACCGATGATGTTTTAG
GAGTCATAGAACAATATGCTCCCGCCAGTGCGATGTCACTCGTTGAATCCATTACCCATCAAACCTTAAATAATCGAAAT
GGCGGTTTGCTGTCATTCGGGATTATCGCCGCATTATGGTCTGCGTCTAATGGAATGAATGCGATCGTCCGGTCGCTGAA
CCACGCGTATGATGTGGAAGAAAACCGCTCTTTTATCATTGTTCGTCTAACCTCGATTTTTTTGACGATTGCCATGGTAT
TTACGATTTTAGTGGCTTTGCTTCTGCCGGTATTTGGCCGGGAGATTGGAAGGCTCGCTTCTGACTTTGTCGGCGCGTCG
GATCTGTTTTTATCCGTCTGGGCCGCCATTCGCTGGGGTGTCAGCCCGCTTGTGCTTTTGATTGTTTTTTCCGCGCTGTA
TGTGATTGCGCCGAACAAAAAGCTGTCTCTCCGGTTTGTCATGCCGGGTGCGGTCTTTGCGACTATCGGCTGGATCATTG
TCAGCACATTGTTTTCATTTTACGTCAGCACGTTTGCGAACTATAGCGCCACTTACGGGAGCATCGGGGGAATCATCGTT
CTGATGATTTGGTTTTACTTGAGCGGCATTTTAATTATCCTAGGCGGAGAAATCAACGCTCTTTTACATAAACGTAAAAA
GCTTCCTGATGAAAATCCCTACCATTAG

Upstream 100 bases:

>100_bases
TGAAAGAGCTGAAGAAAACAACGCCGCAAGTGATGGAACTCGTGCAAGAAACGAAAGAGCATTTTTCAAAAAAATGATCA
AACATGCGAGGTGAGACGAC

Downstream 100 bases:

>100_bases
CGCACCCTATAAACGAACTTCGGTTCAAAAAGAAGTCGGGGGGATATCGTGATGACCAAGCATACGAAAAAAGGCGGAAG
CCATAACAAACAAAACTCGA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAYLPLSTDDVLGVIEQYAPASAMSLVESITHQTLNNRN
GGLLSFGIIAALWSASNGMNAIVRSLNHAYDVEENRSFIIVRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGAS
DLFLSVWAAIRWGVSPLVLLIVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLFSFYVSTFANYSATYGSIGGIIV
LMIWFYLSGILIILGGEINALLHKRKKLPDENPYH

Sequences:

>Translated_275_residues
MSFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAYLPLSTDDVLGVIEQYAPASAMSLVESITHQTLNNRN
GGLLSFGIIAALWSASNGMNAIVRSLNHAYDVEENRSFIIVRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGAS
DLFLSVWAAIRWGVSPLVLLIVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLFSFYVSTFANYSATYGSIGGIIV
LMIWFYLSGILIILGGEINALLHKRKKLPDENPYH
>Mature_274_residues
SFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAYLPLSTDDVLGVIEQYAPASAMSLVESITHQTLNNRNG
GLLSFGIIAALWSASNGMNAIVRSLNHAYDVEENRSFIIVRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGASD
LFLSVWAAIRWGVSPLVLLIVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLFSFYVSTFANYSATYGSIGGIIVL
MIWFYLSGILIILGGEINALLHKRKKLPDENPYH

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFKH_BACSU (O34437)

Other databases:

- EMBL:   D83967
- EMBL:   AL009126
- PIR:   C69808
- RefSeq:   NP_388671.1
- ProteinModelPortal:   O34437
- EnsemblBacteria:   EBBACT00000001263
- GeneID:   936134
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07900
- NMPDR:   fig|224308.1.peg.790
- GenoList:   BSU07900
- GeneTree:   EBGT00050000002190
- HOGENOM:   HBG695153
- OMA:   CEREGRK
- ProtClustDB:   CLSK2393371
- BioCyc:   BSUB:BSU07900-MONOMER
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30469; Mature: 30338

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdb94100)-; HASH(0xd92f36c)-; HASH(0xccddd68)-; HASH(0xd61dbdc)-; HASH(0xdb657ac)-; HASH(0xd7c34f4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAYLPLSTDDVLGVIEQYA
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
PASAMSLVESITHQTLNNRNGGLLSFGIIAALWSASNGMNAIVRSLNHAYDVEENRSFII
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEE
VRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGASDLFLSVWAAIRWGVSPLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH
IVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLFSFYVSTFANYSATYGSIGGIIV
HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LMIWFYLSGILIILGGEINALLHKRKKLPDENPYH
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure 
SFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAYLPLSTDDVLGVIEQYA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
PASAMSLVESITHQTLNNRNGGLLSFGIIAALWSASNGMNAIVRSLNHAYDVEENRSFII
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEE
VRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGASDLFLSVWAAIRWGVSPLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH
IVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLFSFYVSTFANYSATYGSIGGIIV
HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LMIWFYLSGILIILGGEINALLHKRKKLPDENPYH
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377