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The map label for this gene is yfmJ

Identifier: 16077812

GI number: 16077812

Start: 817810

End: 818829

Strand: Reverse

Name: yfmJ

Synonym: BSU07450

Alternate gene names: 16077812

Gene position: 818829-817810 (Counterclockwise)

Preceding gene: 16077813

Following gene: 255767185

Centisome position: 19.42

GC content: 48.63

Gene sequence:

>1020_bases
ATGACAGCATCTCAGCAGCAAATTCAATTAGCAAGACGTCCACAAGGTATTCCTGTTCATGAAGACTTTCGCTTTGAAAC
CATTCCGGTTCCTGAACCCAAGCAAGGGGAAGTGCTTGTCAAAACGCTTTATGTATCGGTTGACCCTTATATGCGCGGCC
GTATGCAGGATACGAAGTCATATGTTGAGCCGTTCGCCTTGGATAAAGCGCTTTCTGGAGGGGTTATCGCTGAAGTTGTG
TCAGACGGGAATCATCTGAAAAAAGGCGATATCGTCATCGGAAATCTCAGCTGGCAGGAATTTTCCGCTGTGAGCGAGTC
TGCCTTGCGAAAAATTGATACAAGCCTTGCTCCCGCTTCGGCCTATCTCGGCATTTTGGGAATGACCGGCTTAACAGCAT
ACTTCGGATTGCTGGACATCGGACGCCCGAAGGAAGGCGAAACCGTGGTTGTCTCAGGAGCTGCCGGAGCCGTCGGTTCA
ACAGTCGGGCAAATTGCCAAAATCAAAGGCGCGCGAGTCGTCGGCATCGCGGGCTCTGATGAAAAAATCGACTATTTAAA
ACAGGAGCTTCAGTTTGACGAAGCCATCAATTACAAAACAGCGGATGATATCCAAAAAGCGCTTCAAAACGCTTGTCCTG
ACGGTGTCGATGTGTATTTTGACAATGTCGGCGGACCGATTTCAGACGCGGTGATGAATCTGCTCAATGAATTTGCCCGC
ATTCCGGTGTGCGGCGCCATTTCTTCCTATAACGCAGAAAGCGAAGCAGATGACATGGGCCCTCGTGTCCAATCAAAACT
CATTAAAACGAAGTCGCTGATGCAAGGCTTTATCGTAAGCGACTACTCCGATCGTTTTTCTGAGGGAGCAAAACAGCTGG
CAGAATGGCTGAAGGCTGGTAAACTCCATTACGAGGAAACCATCACAGAAGGCTTCGAAAACATTCCTGACGCGTTTCTC
GGTTTATTTAAGGGAGAAAATAAAGGGAAACAGCTGATCAAGGTCAGTGATCCGAGCTGA

Upstream 100 bases:

>100_bases
ATAAGCTCATCTATAACCTTTTTTGTATGCCAGCTTACCTTTTGTATTTCCTCTCCTGTCCATGTTACAGTGGTGTCAAC
CAAGTGATAGGAGGATGAAA

Downstream 100 bases:

>100_bases
ATGAAGATGAAAACGGGAGGGCTTTTTGCCCTCCTTTTGTGTTTCGATGAGATCAGTTGCGAAGAATCAGCGTAAGAAAA
CCATCTTCATCAGGTTCCGT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLYVSVDPYMRGRMQDTKSYVEPFALDKALSGGVIAEVV
SDGNHLKKGDIVIGNLSWQEFSAVSESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGS
TVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFAR
IPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFL
GLFKGENKGKQLIKVSDPS

Sequences:

>Translated_339_residues
MTASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLYVSVDPYMRGRMQDTKSYVEPFALDKALSGGVIAEVV
SDGNHLKKGDIVIGNLSWQEFSAVSESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGS
TVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFAR
IPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFL
GLFKGENKGKQLIKVSDPS
>Mature_338_residues
TASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLYVSVDPYMRGRMQDTKSYVEPFALDKALSGGVIAEVVS
DGNHLKKGDIVIGNLSWQEFSAVSESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGST
VGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARI
PVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLG
LFKGENKGKQLIKVSDPS

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential)

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family

Homologues:

Organism=Homo sapiens, GI226059159, Length=330, Percent_Identity=43.3333333333333, Blast_Score=249, Evalue=2e-66,
Organism=Homo sapiens, GI226059133, Length=330, Percent_Identity=43.3333333333333, Blast_Score=249, Evalue=2e-66,
Organism=Homo sapiens, GI226246682, Length=346, Percent_Identity=42.1965317919075, Blast_Score=243, Evalue=3e-64,
Organism=Homo sapiens, GI226246680, Length=346, Percent_Identity=42.1965317919075, Blast_Score=243, Evalue=3e-64,
Organism=Homo sapiens, GI22748929, Length=346, Percent_Identity=42.1965317919075, Blast_Score=243, Evalue=3e-64,
Organism=Homo sapiens, GI226056130, Length=302, Percent_Identity=41.7218543046358, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI28557745, Length=323, Percent_Identity=30.6501547987616, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI194239674, Length=302, Percent_Identity=25.8278145695364, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI13236495, Length=302, Percent_Identity=25.8278145695364, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI226510941, Length=332, Percent_Identity=47.5903614457831, Blast_Score=308, Evalue=3e-85,
Organism=Caenorhabditis elegans, GI133901710, Length=334, Percent_Identity=36.2275449101796, Blast_Score=204, Evalue=8e-53,
Organism=Caenorhabditis elegans, GI133901712, Length=334, Percent_Identity=36.2275449101796, Blast_Score=203, Evalue=8e-53,
Organism=Caenorhabditis elegans, GI17536829, Length=317, Percent_Identity=27.1293375394322, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323504, Length=324, Percent_Identity=30.8641975308642, Blast_Score=124, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6319520, Length=212, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFMJ_BACSU (O34812)

Other databases:

- EMBL:   D86417
- EMBL:   AL009126
- PIR:   A69813
- RefSeq:   NP_388626.1
- HSSP:   Q9EQZ5
- ProteinModelPortal:   O34812
- SMR:   O34812
- EnsemblBacteria:   EBBACT00000003582
- GeneID:   936106
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07450
- NMPDR:   fig|224308.1.peg.745
- GenoList:   BSU07450
- GeneTree:   EBGT00070000032434
- HOGENOM:   HBG753318
- OMA:   GMFGWQE
- PhylomeDB:   O34812
- ProtClustDB:   CLSK886849
- BioCyc:   BSUB:BSU07450-MONOMER
- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR11695

Pfam domain/function: PF00107 ADH_zinc_N; SSF50129 GroES_like

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36663; Mature: 36532

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLYVSVDPYMRGRMQDTKS
CCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHH
YVEPFALDKALSGGVIAEVVSDGNHLKKGDIVIGNLSWQEFSAVSESALRKIDTSLAPAS
HHHHHHHHHHHCCCHHHHHHCCCCCEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHH
AYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSD
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCC
EKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFAR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH
IPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAG
CCCHHCHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
KLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVSDPS
CCHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEECCCC
>Mature Secondary Structure 
TASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLYVSVDPYMRGRMQDTKS
CCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHH
YVEPFALDKALSGGVIAEVVSDGNHLKKGDIVIGNLSWQEFSAVSESALRKIDTSLAPAS
HHHHHHHHHHHCCCHHHHHHCCCCCEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHH
AYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSD
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCC
EKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFAR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH
IPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAG
CCCHHCHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
KLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVSDPS
CCHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377