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The map label for this gene is ydeK

Identifier: 16077590

GI number: 16077590

Start: 570371

End: 571234

Strand: Reverse

Name: ydeK

Synonym: BSU05230

Alternate gene names: 16077590

Gene position: 571234-570371 (Counterclockwise)

Preceding gene: 16077593

Following gene: 16077589

Centisome position: 13.55

GC content: 53.36

Gene sequence:

>864_bases
ATGAACAAAACAACAAATGGCTGGATAAATGGTTTTATAGGCGTACTCATTTTCAGCGGCTCGCTGCCTGCGACCCGTTT
GGCTGTGTCAGACTTCGATCCGTTATTTCTCACAGTTTGCCGTGCTGCGATAGCTGGTGTACTGGCGGGAGGTCTCCTTC
TCATCTTCCGGCAGCAGCATCCTGCCAAAAGAGATCTCATTTCATTGTTAGTGGTAGCGTTCGGCGTAGTGATTGGTTTC
CCGTTGCTGACAGCTTTAGCGCTTCAGCATGTCACATCCGCACACGCCATTGTCTTCATTGGACTTCTTCCACTCGCAAC
GGCAGTCTTCGGCGTACTGCGCGGGGGTGAACGCCCTCGCCCCGTCTTCTGGATTTTCTCAGCTGCCGGCAGCTTGTTAG
TAGCAGGTTTCGCCCTCATTCAGGGGGGAGGTTCATCCCCGCTTGGCGACGCGTACATGCTGGCTTCTATTGTCGTATGC
GGTCTTGGTTATGCAGAAGGGGCCAAACTTTCACGGCGTCTGGGGAATTGGCAGGTGATCTCATGGGCACTCGTTCTGTC
GCTTCCTCTTATGCTGCCATTGTCGTTCTTTTTTACGCCGGACTCATGGTCGGCGATCGGCGTTCCCGCACTGCTCAGTC
TTGCATATGTATCCTTATTCAGCATGCTGATTGGCTTCGTGTTCTGGTATCGAGGTCTTGCCCAAGGGGGAATTGCAGCG
GTTGGGCAGCTCCAGCTTCTCCAGCCTTTTTTTGGACTGCTGCTTGCCTCAGTGATTCTGCACGAGAAAGTGGGCTGGGC
ACTCGTAGCAGTGAATATCGCCGTTATCATGTGCGTTGCAGCAGCTCGGCGATTTGCAAAGTAA

Upstream 100 bases:

>100_bases
TAAAAGGCCAATTCCAGTTTATAGTCATTGTAATCCTTAGCTGCTGGTTTTGTTAAGAAAATACAGACAATGAACAAGAA
AGATATGTGGAGTGATTATA

Downstream 100 bases:

>100_bases
GGCAGACCTTTAAGCATAAACTTCAAAAATGCATGAAGGTATAAAAATACCAAGGGTTGCTGGCCCTTGGTATTTTGTAT
GCGATCGAGCAGACTTGAGT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGF
PLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVC
GLGYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAA
VGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK

Sequences:

>Translated_287_residues
MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGF
PLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVC
GLGYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAA
VGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK
>Mature_287_residues
MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGF
PLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVC
GLGYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAA
VGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDEK_BACSU (P96668)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   E69778
- RefSeq:   NP_388404.1
- ProteinModelPortal:   P96668
- EnsemblBacteria:   EBBACT00000001725
- GeneID:   938112
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05230
- NMPDR:   fig|224308.1.peg.523
- GenoList:   BSU05230
- GeneTree:   EBGT00050000001294
- HOGENOM:   HBG669411
- OMA:   FIFWYRG
- ProtClustDB:   CLSK2301432
- BioCyc:   BSUB:BSU05230-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 30350; Mature: 30350

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd44463c)-; HASH(0xc2b4800)-; HASH(0xca29908)-; HASH(0xd3b7e5c)-; HASH(0xb84a2c8)-; HASH(0xb4b0f28)-; HASH(0xd40702c)-; HASH(0xc616d6c)-; HASH(0xcd1bbcc)-; HASH(0xccbe300)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQH
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVCGLGYAEGAKLSRRLGNWQVI
CEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
SWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAGGLLLIFRQQH
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFIGLLPLATAVFGVLRGGERPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVCGLGYAEGAKLSRRLGNWQVI
CEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
SWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377