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The map label for this gene is ycnK

Identifier: 16077464

GI number: 16077464

Start: 448461

End: 449033

Strand: Reverse

Name: ycnK

Synonym: BSU03960

Alternate gene names: 16077464

Gene position: 449033-448461 (Counterclockwise)

Preceding gene: 255767126

Following gene: 255767121

Centisome position: 10.65

GC content: 48.17

Gene sequence:

>573_bases
ATGCTTCCGATTAATAGACAGCAACACATACTGAAGTGGCTGAAAGAAGAAGGCTCGCTTAGAATTTCTGACATCAGCGC
AAGGTTCGGCGTTTCGGAAATGACGGTATATAGAGATGTCAATCAGCTGGTTCAGTCAAATCAGGTCATTAAAACGGCCG
GCGGCATCACGCTCCCCGTCCGAACACCTCAAACAGATCATATGTGCAGCTATTGCTTGAAGCCCGTCAATCAAGCTCAT
TCGGTTCAGCTGATTACGGTAAACCAAGACATTGAACAGCTATGCTGCGCACATTGCGCGTTTTTGCGTTACGCGGATAA
AACGGAAGAGGTTTCACACTTGATTTGCAGAGATTTTCTGTTACAGACAACCGTCAGTGCCGGTTCGGCTTATTTCGTCG
TAAATGCTGAATTAAACCTGCACTGCTGCCAGCCGCAGGCCATTCCGTTTGCGACACTTGACCATGCCGAACGATTTCAA
AAAGGATTCGGCGGAGCCGTCTGCACTTTCGACCAAGCGCTGGAAGACATGCTTCAAGACCGAAAGAAACGCTGCACCTG
CACCAAGAAATAA

Upstream 100 bases:

>100_bases
TGCTGTTCAACACATTTTCACATTTTTTATCATCCACTTACTTGTCTCCGTCTCTAAAATCCTCTACGCTTAAATAGATC
TTAATGAAGAGGGTGTATGA

Downstream 100 bases:

>100_bases
CACAACACATACAGCGGAAGGTGGTGTCTGAGTGATGAAGCGAAACAGATGGTGGATCATCCTTCTGCTTTTTCTTGTTT
TCCTGCCGAAAACAAGCTTT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLVQSNQVIKTAGGITLPVRTPQTDHMCSYCLKPVNQAH
SVQLITVNQDIEQLCCAHCAFLRYADKTEEVSHLICRDFLLQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQ
KGFGGAVCTFDQALEDMLQDRKKRCTCTKK

Sequences:

>Translated_190_residues
MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLVQSNQVIKTAGGITLPVRTPQTDHMCSYCLKPVNQAH
SVQLITVNQDIEQLCCAHCAFLRYADKTEEVSHLICRDFLLQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQ
KGFGGAVCTFDQALEDMLQDRKKRCTCTKK
>Mature_190_residues
MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLVQSNQVIKTAGGITLPVRTPQTDHMCSYCLKPVNQAH
SVQLITVNQDIEQLCCAHCAFLRYADKTEEVSHLICRDFLLQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQ
KGFGGAVCTFDQALEDMLQDRKKRCTCTKK

Specific function: May act as a negative transcriptional regulator of ycnJ in the presence of copper. May use copper as a corepressor

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YCNK_BACSU (P94433)

Other databases:

- EMBL:   D50453
- EMBL:   AL009126
- PIR:   G69764
- RefSeq:   NP_388278.1
- ProteinModelPortal:   P94433
- SMR:   P94433
- EnsemblBacteria:   EBBACT00000003995
- GeneID:   938265
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU03960
- NMPDR:   fig|224308.1.peg.397
- GenoList:   BSU03960
- GeneTree:   EBGT00050000002350
- HOGENOM:   HBG338538
- OMA:   INIKSCC
- ProtClustDB:   CLSK871736
- BioCyc:   BSUB:BSU03960-MONOMER
- GO:   GO:0005737
- InterPro:   IPR001034
- InterPro:   IPR008719
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00420

Pfam domain/function: PF08220 HTH_DeoR; PF05573 NosL

EC number: NA

Molecular weight: Translated: 21435; Mature: 21435

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS00894 HTH_DEOR_1; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLVQSNQVIKTAGGITLPV
CCCCCHHHHHHHHHHHCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
RTPQTDHMCSYCLKPVNQAHSVQLITVNQDIEQLCCAHCAFLRYADKTEEVSHLICRDFL
CCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQKGFGGAVCTFDQALEDMLQD
HHHHHCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
RKKRCTCTKK
HHHHCCCCCC
>Mature Secondary Structure
MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLVQSNQVIKTAGGITLPV
CCCCCHHHHHHHHHHHCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
RTPQTDHMCSYCLKPVNQAHSVQLITVNQDIEQLCCAHCAFLRYADKTEEVSHLICRDFL
CCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQKGFGGAVCTFDQALEDMLQD
HHHHHCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
RKKRCTCTKK
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377