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The map label for this gene is yckA

Identifier: 16077406

GI number: 16077406

Start: 367305

End: 367985

Strand: Reverse

Name: yckA

Synonym: BSU03370

Alternate gene names: 16077406

Gene position: 367985-367305 (Counterclockwise)

Preceding gene: 16077407

Following gene: 255767098

Centisome position: 8.73

GC content: 45.37

Gene sequence:

>681_bases
ATGATCAATAGCATTCAGTGGGAATATATTTTCAACACGAAGCTGGCCATTGAATCGTTCCCTTATGTCATAAAAGGCAT
TGGTTATACACTGCTCATCTCTTTTGTAAGCATGTTTGCGGGAACTGTGATCGGCCTGTTCATATCACTCGCCAGAATGT
CTAAACTTGCTTTGTTAAGATGGCCGGCGAAGCTCTATATCTCATTTATGCGAGGCGTTCCGATTTTGGTGATTTTGTTT
ATCCTTTATTTCGGGTTTCCTTATATCGGCATTGAATTTTCCGCTGTCACGGCTGCTTTAATCGGCTTTAGCCTAAACAG
CGCCGCCTACATTGCGGAAATTAACCGTTCAGCCATTTCATCCGTCGAAAAAGGACAGTGGGAAGCCGCATCCTCGCTGG
GTCTTTCCTATTGGCAGACGATGAGGGGCATCATTTTGCCGCAATCGATACGTATTGCGCTGCCTCCGCTTGCCAATGTA
TTGCTCGACTTGATCAAGGCGTCCTCTCTCGCTGCGATGATTACAGTGCCGGAATTGCTCCAGCATGCGAAAATCATCGG
GGGCAGAGAGTTTGATTATATGACCATGTATATTCTGACCGCTCTCATTTATTGGGCCATCTGCTCCATTGCCGCGGTCT
TTCAGAATATCCTTGAGAAAAAATACGCTCATTATGTTTAA

Upstream 100 bases:

>100_bases
TGGCTCTTTGACTAAACTGTCGAAACAATTCTTCAATAAAGCAGATGTATCAAAAAAAATTGATGCCGACGTTCAGGACG
TTGATTTGTAATCGGACGCC

Downstream 100 bases:

>100_bases
ACAAACGTTTCATTAAAAAAAGCCGTTCCCCATGGGACGGCTTTTTTTCTATTGATTCAGCTTCCATTTAAACGGGTCCT
CAAACAGCGACCAGTCGGAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLRWPAKLYISFMRGVPILVILF
ILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANV
LLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNILEKKYAHYV

Sequences:

>Translated_226_residues
MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLRWPAKLYISFMRGVPILVILF
ILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANV
LLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNILEKKYAHYV
>Mature_226_residues
MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLRWPAKLYISFMRGVPILVILF
ILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANV
LLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNILEKKYAHYV

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=48.0769230769231, Blast_Score=216, Evalue=8e-58,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=35.609756097561, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=32.512315270936, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786873, Length=223, Percent_Identity=29.1479820627803, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788645, Length=215, Percent_Identity=31.1627906976744, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=29.3023255813954, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787087, Length=211, Percent_Identity=29.8578199052133, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI48994930, Length=133, Percent_Identity=36.0902255639098, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786874, Length=185, Percent_Identity=28.6486486486486, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=24.0566037735849, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCKA_BACSU (P42399)

Other databases:

- EMBL:   D30762
- EMBL:   D50453
- EMBL:   AL009126
- PIR:   C69760
- RefSeq:   NP_388219.1
- ProteinModelPortal:   P42399
- EnsemblBacteria:   EBBACT00000002633
- GeneID:   938323
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU03370
- NMPDR:   fig|224308.1.peg.338
- GenoList:   BSU03370
- GeneTree:   EBGT00070000031800
- HOGENOM:   HBG704821
- OMA:   SIQWEYI
- PhylomeDB:   P42399
- ProtClustDB:   CLSK886670
- BioCyc:   BSUB:BSU03370-MONOMER
- InterPro:   IPR010065
- InterPro:   IPR000515
- TIGRFAMs:   TIGR01726

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 25229; Mature: 25229

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc5c3448)-; HASH(0xc2abf18)-; HASH(0xc2b4710)-; HASH(0xbf73e10)-; HASH(0xcc12828)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLR
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WPAKLYISFMRGVPILVILFILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAIS
CCHHHHHHHHCCHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANVLLDLIKASSLAAMITVPELL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHH
QHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNILEKKYAHYV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLR
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WPAKLYISFMRGVPILVILFILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAIS
CCHHHHHHHHCCHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANVLLDLIKASSLAAMITVPELL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHH
QHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNILEKKYAHYV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377