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The map label for this gene is ycgR

Identifier: 16077394

GI number: 16077394

Start: 350858

End: 351742

Strand: Reverse

Name: ycgR

Synonym: BSU03250

Alternate gene names: 16077394

Gene position: 351742-350858 (Counterclockwise)

Preceding gene: 16077395

Following gene: 16077393

Centisome position: 8.34

GC content: 45.76

Gene sequence:

>885_bases
GTGACAGCACAATCATCTTTTCTTCAGCTGAATTCTATTTTTATCAGCATTTTAATAGAAGCCATTCCGTTTATTCTGAT
TGGCGTCATACTTTCCGGAATCATTCAAATGTTTGTTTCTGAAGAAATGATTGCAAGAATCATGCCGAAAAACCGTTTTC
TCGCCGTTTTATTCGGTGCGCTGGCCGGCGTTTTATTTCCCGCCTGCGAATGCGGCATCATCCCGATTACGAGGCGGCTT
CTGTTAAAGGGAGTTCCTCTGCATGCGGGCGTTGCTTTCATGCTGACCGCGCCTATCATTAATCCTATCGTTTTATTTTC
TACTTATATTGCGTTCGGGAATAGATGGAGCGTGGTCTTTTACAGAGGCGGACTGGCTCTCGCCGTTTCGCTGATCATCG
GGGTCATCTTATCCTATCAATTTAAGGATAACCAGCTTTTAAAGCCTGATGAACCCGGGCACCACCATCATCATCACGGC
ACCTTGCTCCAAAAACTGGGCGGGACCTTGCGGCATGCCATTGATGAATTTTTCTCCGTGGGGAAATATTTAATCATCGG
CGCCTTTATCGCAGCCGCTATGCAGACGTATGTCAAAACATCCACTCTGCTTGCGATCGGGCAGAATGATGTATCCTCTT
CCCTCGTGATGATGGGTCTGGCGTTTGTCCTGTCGCTTTGTTCAGAAGTTGATGCGTTCATCGCGTCTTCCTTCAGCAGC
ACGTTTTCATTAGGATCGTTAATCGCCTTTCTCGTCTTTGGTGCAATGGTGGATATTAAGAATCTATTGATGATGCTTGC
GGCCTTCAAAAAACGATTTGTTTTCCTGCTGATTACATACATTGTCGTGATTGTTTTAGCGGGATCACTACTGGTAAAGG
GGTGA

Upstream 100 bases:

>100_bases
ACCAAAGTGAAACGATCCTTTCCCCTCCTCCGTCAAACAAGCAGTGCCTTTTTTTCTGGTATCATAAGAAAGGCAGCTTA
ACATGAGCGGAGGTTTTATT

Downstream 100 bases:

>100_bases
TTGGATGTTTCGTTTATTGGTGCTGATGGGATTTACGTTTTTCTTTTATCATCTGCATGCCTCAGGAAATCTAACAAAAT
ATATCAATATGAAATATGCC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMIARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRL
LLKGVPLHAGVAFMLTAPIINPIVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHG
TLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSS
TFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG

Sequences:

>Translated_294_residues
MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMIARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRL
LLKGVPLHAGVAFMLTAPIINPIVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHG
TLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSS
TFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG
>Mature_293_residues
TAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMIARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRLL
LKGVPLHAGVAFMLTAPIINPIVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHGT
LLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSST
FSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCGR_BACSU (P94395)

Other databases:

- EMBL:   D50453
- EMBL:   AL009126
- PIR:   E69759
- RefSeq:   NP_388207.1
- ProteinModelPortal:   P94395
- EnsemblBacteria:   EBBACT00000003885
- GeneID:   938335
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU03250
- NMPDR:   fig|224308.1.peg.326
- GenoList:   BSU03250
- GeneTree:   EBGT00050000003977
- HOGENOM:   HBG564967
- OMA:   ALPACEC
- ProtClustDB:   CLSK237492
- BioCyc:   BSUB:BSU03250-MONOMER
- InterPro:   IPR005524

Pfam domain/function: PF03773 DUF318

EC number: NA

Molecular weight: Translated: 31930; Mature: 31799

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcacaea0)-; HASH(0xbab979c)-; HASH(0xbd88ed4)-; HASH(0xcedd258)-; HASH(0xca7c0f4)-; HASH(0xcad5f98)-; HASH(0xcad61b4)-; HASH(0xc870fe8)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMIARIMPKNRFLAVLFGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LAGVLFPACECGIIPITRRLLLKGVPLHAGVAFMLTAPIINPIVLFSTYIAFGNRWSVVF
HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
YRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHGTLLQKLGGTLRHAIDEFFSV
ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSS
HHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure 
TAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMIARIMPKNRFLAVLFGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LAGVLFPACECGIIPITRRLLLKGVPLHAGVAFMLTAPIINPIVLFSTYIAFGNRWSVVF
HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
YRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHGTLLQKLGGTLRHAIDEFFSV
ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSS
HHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377