BacMap

Definition	Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome.
Accession	NC_000964
Length	4,215,606

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The map label for this gene is ybdM

Identifier: 16077272

GI number: 16077272

Start: 223219

End: 223989

Strand: Reverse

Name: ybdM

Synonym: BSU02030

Alternate gene names: 16077272

Gene position: 223989-223219 (Counterclockwise)

Preceding gene: 16077273

Following gene: 16077248

Centisome position: 5.31

GC content: 41.76

Gene sequence:

>771_bases
ATGGCATTAAAACTTCTAAAAAAACTGCTATTTGACCGCCCTCTAAAGAACGGCGTTATCTTAAATCATCAATACAAAAT
CGAAGAGTGCCTCGGTATGGGAGGCTACGGTTTGGTTTATTTGTGCACCGATATCCTAGCTCAAACACCTTATGTCTTAA
AACAGCTTCGGCCGACAAAAGCCAAAAAGGAAAAAGAGAAAGTCCGATTCCAGCAGGAAATAAAACTGCTCAAAAACATT
CACCACCCGCAAATTCCGGGCTTCATAGATGAATTCATCATAGACGGACAGGCTTATTATGTCATGCAGTTCATTGAGGG
AGAGAATATAGAAGAATTATTATTTTTTCGAAAACAGCCGTTCACAGAGCTTATGGCGTTACAACTGATTTCGCAGCTGC
TTGAGATTATAGAATACCTGCATGATCGCCTTATCTTCCACAGCGACATCAGAACGCCTAATATCATCATCAATGATGGC
AGGCTCTGCCTCATCGATTTCGGCCTTGCCAAACAATTGACTCCTGAAGAAATGGAGGAAATAAAGGTACGAAAACAGGA
TGACTTCTTCGATCTCGGAGAAACGCTGTTATTCTTGCTGTACTCTCAATATAAAGGAAAAAAGAAGAAAAACGGCACTT
GGCTGGAGGAATTAACACTGACAAAGGAAGTAACCTTGCTGCTGAAAAGATTATTGGGCATTGAGGAAGAGTATCAGCAC
ACCGCTTCCATTCGCGAGGATCTAAACCGGGCCATTCAATCGGTCACATAA

Upstream 100 bases:

>100_bases
ACAAAGCAGTTTTAACTTATACCGAGCCGGTTATCCGGCTCTTTTTTATTCTCCGTCTAGAAGGTAAACTATAGTCAGTA
CAACCAAGGGAAGTGCAGAC

Downstream 100 bases:

>100_bases
AAAAACCCTTGTCCCAAAAGCGGAACAAGAACTTTTTTTGGATTAACTGCTGCTGTAGCTCCGGCGTTTGTAACGATGAC
TGCCGCCATAACGGTCGTAG

Product: protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTDILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNI
HHPQIPGFIDEFIIDGQAYYVMQFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDG
RLCLIDFGLAKQLTPEEMEEIKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEELTLTKEVTLLLKRLLGIEEEYQH
TASIREDLNRAIQSVT

Sequences:

>Translated_256_residues
MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTDILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNI
HHPQIPGFIDEFIIDGQAYYVMQFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDG
RLCLIDFGLAKQLTPEEMEEIKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEELTLTKEVTLLLKRLLGIEEEYQH
TASIREDLNRAIQSVT
>Mature_255_residues
ALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTDILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNIH
HPQIPGFIDEFIIDGQAYYVMQFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDGR
LCLIDFGLAKQLTPEEMEEIKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEELTLTKEVTLLLKRLLGIEEEYQHT
ASIREDLNRAIQSVT

Specific function: Unknown

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 protein kinase domain

Homologues:

Organism=Homo sapiens, GI116008194, Length=152, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI116008192, Length=152, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI116008190, Length=152, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI116008188, Length=152, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI217330634, Length=158, Percent_Identity=30.379746835443, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32483399, Length=155, Percent_Identity=25.8064516129032, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI41872673, Length=147, Percent_Identity=31.2925170068027, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI146219832, Length=152, Percent_Identity=29.6052631578947, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI63998898, Length=150, Percent_Identity=30.6666666666667, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4758128, Length=157, Percent_Identity=28.0254777070064, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI41281453, Length=145, Percent_Identity=28.9655172413793, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI23943882, Length=176, Percent_Identity=28.9772727272727, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI42794769, Length=150, Percent_Identity=25.3333333333333, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI7662170, Length=151, Percent_Identity=25.1655629139073, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI261244925, Length=207, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI190886457, Length=150, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI261244927, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI261244923, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19923407, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI261244921, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI261244929, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI222418622, Length=207, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI41281753, Length=160, Percent_Identity=27.5, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI68077164, Length=149, Percent_Identity=30.8724832214765, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI225637562, Length=158, Percent_Identity=27.2151898734177, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI189491753, Length=150, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI189491751, Length=150, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4505601, Length=150, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI189491757, Length=150, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI225637560, Length=160, Percent_Identity=27.5, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI189491759, Length=150, Percent_Identity=25.3333333333333, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI189491755, Length=150, Percent_Identity=25.3333333333333, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI85838511, Length=156, Percent_Identity=31.4102564102564, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4502553, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI225735561, Length=188, Percent_Identity=25, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI45439370, Length=146, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4557511, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI291045230, Length=158, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI291045228, Length=158, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI291045225, Length=158, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI291045223, Length=158, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI19424132, Length=208, Percent_Identity=25, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17511015, Length=206, Percent_Identity=31.0679611650485, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71982783, Length=157, Percent_Identity=24.8407643312102, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71982774, Length=157, Percent_Identity=24.8407643312102, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982766, Length=157, Percent_Identity=24.8407643312102, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17570595, Length=250, Percent_Identity=26.8, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI133901724, Length=159, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI72000919, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000921, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000923, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI86565223, Length=165, Percent_Identity=27.8787878787879, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI133951926, Length=157, Percent_Identity=26.1146496815287, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI133951912, Length=157, Percent_Identity=26.1146496815287, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI115533548, Length=165, Percent_Identity=27.8787878787879, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17566666, Length=151, Percent_Identity=27.8145695364238, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25146947, Length=165, Percent_Identity=27.8787878787879, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25146944, Length=152, Percent_Identity=28.2894736842105, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193207037, Length=166, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32565889, Length=166, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32565886, Length=166, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193205134, Length=159, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI133901722, Length=159, Percent_Identity=26.4150943396226, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193208793, Length=153, Percent_Identity=28.1045751633987, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193208795, Length=153, Percent_Identity=28.1045751633987, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115532262, Length=167, Percent_Identity=29.3413173652695, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322710, Length=146, Percent_Identity=33.5616438356164, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324557, Length=161, Percent_Identity=29.8136645962733, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321780, Length=144, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323142, Length=165, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323643, Length=148, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6325053, Length=186, Percent_Identity=26.3440860215054, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321126, Length=159, Percent_Identity=26.4150943396226, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6320674, Length=160, Percent_Identity=26.25, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281359563, Length=161, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281359561, Length=161, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI45552151, Length=161, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI221378052, Length=157, Percent_Identity=24.203821656051, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17864254, Length=157, Percent_Identity=24.203821656051, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644584, Length=157, Percent_Identity=24.203821656051, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644586, Length=157, Percent_Identity=24.203821656051, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45551867, Length=151, Percent_Identity=28.476821192053, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45553329, Length=151, Percent_Identity=28.476821192053, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45550727, Length=151, Percent_Identity=28.476821192053, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45553327, Length=151, Percent_Identity=28.476821192053, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17647247, Length=149, Percent_Identity=30.2013422818792, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161076714, Length=148, Percent_Identity=31.0810810810811, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24643817, Length=229, Percent_Identity=27.9475982532751, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBDM_BACSU (O31435)

Other databases:

- EMBL:   AB006424
- EMBL:   AL009126
- PIR:   H69747
- RefSeq:   NP_388085.1
- ProteinModelPortal:   O31435
- SMR:   O31435
- EnsemblBacteria:   EBBACT00000000701
- GeneID:   938464
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU02030
- NMPDR:   fig|224308.1.peg.204
- GenoList:   BSU02030
- GeneTree:   EBGT00050000001625
- OMA:   EGRFGIC
- ProtClustDB:   CLSK2752303
- BioCyc:   BSUB:BSU02030-MONOMER
- InterPro:   IPR011009
- InterPro:   IPR000719
- InterPro:   IPR017441
- InterPro:   IPR017442

Pfam domain/function: PF00069 Pkinase; SSF56112 Kinase_like

EC number: =2.7.11.1

Molecular weight: Translated: 30060; Mature: 29929

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00107 PROTEIN_KINASE_ATP; PS50011 PROTEIN_KINASE_DOM; PS00108 PROTEIN_KINASE_ST; PS00109 PROTEIN_KINASE_TYR

Important sites: ACT_SITE 149-149 BINDING 54-54

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTDILAQTPYVLKQLRPTK
CHHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCHH
AKKEKEKVRFQQEIKLLKNIHHPQIPGFIDEFIIDGQAYYVMQFIEGENIEELLFFRKQP
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCC
FTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDGRLCLIDFGLAKQLTPEEMEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCHHHCCCHHHHHH
IKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEELTLTKEVTLLLKRLLGIEEEYQH
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
TASIREDLNRAIQSVT
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTDILAQTPYVLKQLRPTK
HHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCHH
AKKEKEKVRFQQEIKLLKNIHHPQIPGFIDEFIIDGQAYYVMQFIEGENIEELLFFRKQP
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCC
FTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDGRLCLIDFGLAKQLTPEEMEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCHHHCCCHHHHHH
IKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEELTLTKEVTLLLKRLLGIEEEYQH
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
TASIREDLNRAIQSVT
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377