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The map label for this gene is abrB

Identifier: 16077105

GI number: 16077105

Start: 44848

End: 45138

Strand: Reverse

Name: abrB

Synonym: BSU00370

Alternate gene names: 16077105

Gene position: 45138-44848 (Counterclockwise)

Preceding gene: 16077223

Following gene: 16077085

Centisome position: 1.07

GC content: 35.4

Gene sequence:

>291_bases
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Upstream 100 bases:

>100_bases
CGATTATTGGAAACCTTGTTATGCTATGAAGGTAAGGATTTTGTCGAATAATGACGAAGAAAAATATAATTTAAACAAAT
AAGTATCTCTTGGGAGGAGA

Downstream 100 bases:

>100_bases
TCATTTCTTGTACAAAAAACGTTCTTGTTATGACACAAGAACGTTTTTTTATTGCTTAATATGGTAAGCATCGTACACTT
CACGCTTTGGTACATTGCGA

Product: transcriptional regulator for transition state genes

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Sequences:

>Translated_96_residues
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK
>Mature_96_residues
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ABRB_BACSU (P08874)

Other databases:

- EMBL:   X12820
- EMBL:   M26917
- EMBL:   D26185
- EMBL:   X61953
- EMBL:   AL009126
- PIR:   S03096
- RefSeq:   NP_387918.1
- PDB:   1YFB
- PDB:   1YSF
- PDB:   1Z0R
- PDB:   2K1N
- PDB:   2RO4
- PDBsum:   1YFB
- PDBsum:   1YSF
- PDBsum:   1Z0R
- PDBsum:   2K1N
- PDBsum:   2RO4
- ProteinModelPortal:   P08874
- SMR:   P08874
- DIP:   DIP-46306N
- EnsemblBacteria:   EBBACT00000003485
- GeneID:   937009
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU00370
- NMPDR:   fig|224308.1.peg.37
- GenoList:   BSU00370
- GeneTree:   EBGT00070000031935
- HOGENOM:   HBG305668
- OMA:   EVSDDNF
- ProtClustDB:   CLSK886557
- BioCyc:   BSUB:BSU00370-MONOMER
- GO:   GO:0006350
- InterPro:   IPR006339
- InterPro:   IPR007159
- SMART:   SM00966
- TIGRFAMs:   TIGR01439

Pfam domain/function: PF04014 SpoVT_AbrB

EC number: NA

Molecular weight: Translated: 10773; Mature: 10773

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTG
CCCCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEC
EVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK
CCCCCCEEEECCEEEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTG
CCCCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEC
EVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK
CCCCCCEEEECCEEEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787