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The map label for this gene is psd [H]

Identifier: 159901374

GI number: 159901374

Start: 6196878

End: 6197540

Strand: Reverse

Name: psd [H]

Synonym: Haur_4863

Alternate gene names: 159901374

Gene position: 6197540-6196878 (Counterclockwise)

Preceding gene: 159901377

Following gene: 159901373

Centisome position: 97.65

GC content: 52.79

Gene sequence:

>663_bases
ATGCCTTCTAACCGCGCTCGTGTTCGCCGTTCACTGCCGGGTATTGCCATCGAAGGCATGCCTTTCATCGGAGCCGGCTT
GGGTTTGACCGCCCTGACAGCGTTATTTAGTCGCAAGGCAGCGATCTTACCTCTCGCGCTCACAGCCTTTACCAGCTATT
TCTTCCGCGACCCCGACCGCGAATGCCCCGCCGATAGTTCAATTTTATACGCCGCCGCTGATGGCCACATTACGATGATC
GATGAAGTTGATGAACCTCGCTTTATTGGCGGCAAAGCCACGCGAATCGTCACCTTCTTATCGGTATTCGATGTGCATAT
CAATCGCACCCCTTGCGCTGGCACAGTCCAATATCGCGATTATGTGCAAGGCGAATTTCGCGCTGCCTGGGATGGCGAAG
CCGATATCGTCAATGAACGAGCCTATCTTGGGCTGGAAACTGAGCATGGCCCAGTTTTGATTAGCCAAATTGCTGGATTG
GTAGCTCGTCGAATTATCACATGGCCAGTGGTTGGCGAAGAATTAGGCGCAGGCGAACGCTTTGGCTTAATTAAATTTGG
CTCACGTACCGATATTTTGGTGCCAAGCGGCTCGATCAACGTCTTTGTCAAGAAGGGGCAGGCCATCAAAGGTGGGTTGA
CCCAGATTGGAGCATGGCTGTGA

Upstream 100 bases:

>100_bases
AAATTAACAAAGCACGATGGTATAATTACGCCTCAATCCAAGCATGCGTGTTGCAGCGCCACTTACGGCCTGTCTAATAG
TTTTTTTAAGGAGTCGCTTC

Downstream 100 bases:

>100_bases
AATTTCGCCGTTCATGGGTTCCCAATCTTGTTACGTCGGGCAACCTGTTTTGCGGCTTTTTAGCAGTTATTGCTGCTGTT
GATGGTCAGGCCTTCAAAGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MPSNRARVRRSLPGIAIEGMPFIGAGLGLTALTALFSRKAAILPLALTAFTSYFFRDPDRECPADSSILYAAADGHITMI
DEVDEPRFIGGKATRIVTFLSVFDVHINRTPCAGTVQYRDYVQGEFRAAWDGEADIVNERAYLGLETEHGPVLISQIAGL
VARRIITWPVVGEELGAGERFGLIKFGSRTDILVPSGSINVFVKKGQAIKGGLTQIGAWL

Sequences:

>Translated_220_residues
MPSNRARVRRSLPGIAIEGMPFIGAGLGLTALTALFSRKAAILPLALTAFTSYFFRDPDRECPADSSILYAAADGHITMI
DEVDEPRFIGGKATRIVTFLSVFDVHINRTPCAGTVQYRDYVQGEFRAAWDGEADIVNERAYLGLETEHGPVLISQIAGL
VARRIITWPVVGEELGAGERFGLIKFGSRTDILVPSGSINVFVKKGQAIKGGLTQIGAWL
>Mature_219_residues
PSNRARVRRSLPGIAIEGMPFIGAGLGLTALTALFSRKAAILPLALTAFTSYFFRDPDRECPADSSILYAAADGHITMID
EVDEPRFIGGKATRIVTFLSVFDVHINRTPCAGTVQYRDYVQGEFRAAWDGEADIVNERAYLGLETEHGPVLISQIAGLV
ARRIITWPVVGEELGAGERFGLIKFGSRTDILVPSGSINVFVKKGQAIKGGLTQIGAWL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 23823; Mature: 23692

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNRARVRRSLPGIAIEGMPFIGAGLGLTALTALFSRKAAILPLALTAFTSYFFRDPDR
CCCCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
ECPADSSILYAAADGHITMIDEVDEPRFIGGKATRIVTFLSVFDVHINRTPCAGTVQYRD
CCCCCCCEEEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCCCCCEEHHHH
YVQGEFRAAWDGEADIVNERAYLGLETEHGPVLISQIAGLVARRIITWPVVGEELGAGER
HCCCCEEEECCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCC
FGLIKFGSRTDILVPSGSINVFVKKGQAIKGGLTQIGAWL
EEEEEECCCCEEEEECCCEEEEEECCCCCCCCHHHHCCCC
>Mature Secondary Structure 
PSNRARVRRSLPGIAIEGMPFIGAGLGLTALTALFSRKAAILPLALTAFTSYFFRDPDR
CCCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
ECPADSSILYAAADGHITMIDEVDEPRFIGGKATRIVTFLSVFDVHINRTPCAGTVQYRD
CCCCCCCEEEEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCCCCCEEHHHH
YVQGEFRAAWDGEADIVNERAYLGLETEHGPVLISQIAGLVARRIITWPVVGEELGAGER
HCCCCEEEECCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCC
FGLIKFGSRTDILVPSGSINVFVKKGQAIKGGLTQIGAWL
EEEEEECCCCEEEEECCCEEEEEECCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA