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The map label for this gene is ybdK [C]

Identifier: 159901342

GI number: 159901342

Start: 6159692

End: 6160849

Strand: Direct

Name: ybdK [C]

Synonym: Haur_4831

Alternate gene names: 159901342

Gene position: 6159692-6160849 (Clockwise)

Preceding gene: 159901341

Following gene: 159901343

Centisome position: 97.06

GC content: 48.96

Gene sequence:

>1158_bases
ATGGAATATCGTGATCCGGGGCATCCGCATTTTCCTTTTACGATTGGGATCGAAGAAGAATATCAGATTATCGATCCTGA
AACCCGCGAATTAAAATCGTACATCACCCAAATTCTCGACGAGGGTCAGTTGATTTTACGTGAACAGATGAAGCCCGAAA
TGCATCAATCGATTGTCGAAGTGGGCACGCATGTCTGTCGCACGGTCGAGGAAGCTCGCGCCGAAATTATTCGTTTGCGT
GGCGCAATTGGCAGTTTGGCCGCGAGCAAAGGCTTGCGAATTGCCGCCGCTGGCACACACCCATTTTCATCGTGGCAAAA
GCAGGATATTTATCCCCATGAGCGCTATTATGGCGTGATTGAGGAGATGCAAGAGGCAGCGCGGCGCTTGTTGATTTTTG
GCATGCATGTGCACATCGGCATGCCCGATAACGAAACCTGCATCGAAATTATGAATGTGGCGCGGTACTTTCTGCCGCAT
TTGTTGGCGCTTTCCACTTCATCGCCCTTTTGGATGGGGCGCAAAACTGGCTTTCAATCGTATCGCTCGATCATCTTTAC
CAACTTCCCACGTACTGGCATTCCCGACACCTTCCAATCGTATGCGGAATTTGAGCAATATATCAACATTTTGCTCAAAA
CTCATAGCATCGACAATGGCAAAAAAGTCTGGTGGGATGCGCGGCCACACCCGATGTTTGGCACGCTAGAAGTGCGAATT
TGCGATATTGCCACCAAAGTTGACGAAGCAATTATGATTGCTGGCTTGGTTCAAGCGATTTTTGTCAAAATTTACAGCTT
GTTTCGCCAAAACCAAACTTTCCGCGTCTATAGTCGTGCCTTGATCAACGAAAACAAATGGCGGGCGGCACGTTATGGCA
TGGGTGGCAAACTGATTGATTTTGGCCGCCGCGAAGAATTATCTGCCCATGATCTGATGGCCGAATTACGCGAATTTGTT
GATGATGTGGTTGATGACCTTGGCTCACGGGCGGCGGTCGATTATATTGACCAAGTGCTCAAGCATGGCACCAGCGCCGA
ACGCCAACTGCGTACCTACGAAGAAACTGGCGATATCAAAGCAGTTGTCGATCAGCTGATTCGTGAAACCATGGAAGGTG
TGCCGCTCGATCAGGCAACTCAAGTAGTCAGCGGATAA

Upstream 100 bases:

>100_bases
CATAGACAAGCGCAAAAACATCAACTATGCTAAAGGGCAATACCACTGGCAGCAACCCACCCAACGCCCACTATCAACTG
ACACACCAACGGGGGATCTT

Downstream 100 bases:

>100_bases
CGCTTCTTTTGCGCTAACCCCTCGCCCGTGGTTGGGTTGAGGGGTATTTTTGTTGCGGTTTGCCTGCAACGTTGATTAAT
ACTTTTGTTTTTGCTCAAGC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MEYRDPGHPHFPFTIGIEEEYQIIDPETRELKSYITQILDEGQLILREQMKPEMHQSIVEVGTHVCRTVEEARAEIIRLR
GAIGSLAASKGLRIAAAGTHPFSSWQKQDIYPHERYYGVIEEMQEAARRLLIFGMHVHIGMPDNETCIEIMNVARYFLPH
LLALSTSSPFWMGRKTGFQSYRSIIFTNFPRTGIPDTFQSYAEFEQYINILLKTHSIDNGKKVWWDARPHPMFGTLEVRI
CDIATKVDEAIMIAGLVQAIFVKIYSLFRQNQTFRVYSRALINENKWRAARYGMGGKLIDFGRREELSAHDLMAELREFV
DDVVDDLGSRAAVDYIDQVLKHGTSAERQLRTYEETGDIKAVVDQLIRETMEGVPLDQATQVVSG

Sequences:

>Translated_385_residues
MEYRDPGHPHFPFTIGIEEEYQIIDPETRELKSYITQILDEGQLILREQMKPEMHQSIVEVGTHVCRTVEEARAEIIRLR
GAIGSLAASKGLRIAAAGTHPFSSWQKQDIYPHERYYGVIEEMQEAARRLLIFGMHVHIGMPDNETCIEIMNVARYFLPH
LLALSTSSPFWMGRKTGFQSYRSIIFTNFPRTGIPDTFQSYAEFEQYINILLKTHSIDNGKKVWWDARPHPMFGTLEVRI
CDIATKVDEAIMIAGLVQAIFVKIYSLFRQNQTFRVYSRALINENKWRAARYGMGGKLIDFGRREELSAHDLMAELREFV
DDVVDDLGSRAAVDYIDQVLKHGTSAERQLRTYEETGDIKAVVDQLIRETMEGVPLDQATQVVSG
>Mature_385_residues
MEYRDPGHPHFPFTIGIEEEYQIIDPETRELKSYITQILDEGQLILREQMKPEMHQSIVEVGTHVCRTVEEARAEIIRLR
GAIGSLAASKGLRIAAAGTHPFSSWQKQDIYPHERYYGVIEEMQEAARRLLIFGMHVHIGMPDNETCIEIMNVARYFLPH
LLALSTSSPFWMGRKTGFQSYRSIIFTNFPRTGIPDTFQSYAEFEQYINILLKTHSIDNGKKVWWDARPHPMFGTLEVRI
CDIATKVDEAIMIAGLVQAIFVKIYSLFRQNQTFRVYSRALINENKWRAARYGMGGKLIDFGRREELSAHDLMAELREFV
DDVVDDLGSRAAVDYIDQVLKHGTSAERQLRTYEETGDIKAVVDQLIRETMEGVPLDQATQVVSG

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=352, Percent_Identity=29.8295454545455, Blast_Score=181, Evalue=9e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_HERA2 (A9B2Z8)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001547589.1
- ProteinModelPortal:   A9B2Z8
- SMR:   A9B2Z8
- GeneID:   5736676
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_4831
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13515
- BioCyc:   HAUR316274:HAUR_4831-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 44163; Mature: 44163

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYRDPGHPHFPFTIGIEEEYQIIDPETRELKSYITQILDEGQLILREQMKPEMHQSIVE
CCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
VGTHVCRTVEEARAEIIRLRGAIGSLAASKGLRIAAAGTHPFSSWQKQDIYPHERYYGVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
EEMQEAARRLLIFGMHVHIGMPDNETCIEIMNVARYFLPHLLALSTSSPFWMGRKTGFQS
HHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
YRSIIFTNFPRTGIPDTFQSYAEFEQYINILLKTHSIDNGKKVWWDARPHPMFGTLEVRI
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEE
CDIATKVDEAIMIAGLVQAIFVKIYSLFRQNQTFRVYSRALINENKWRAARYGMGGKLID
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCCEEC
FGRREELSAHDLMAELREFVDDVVDDLGSRAAVDYIDQVLKHGTSAERQLRTYEETGDIK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
AVVDQLIRETMEGVPLDQATQVVSG
HHHHHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure
MEYRDPGHPHFPFTIGIEEEYQIIDPETRELKSYITQILDEGQLILREQMKPEMHQSIVE
CCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
VGTHVCRTVEEARAEIIRLRGAIGSLAASKGLRIAAAGTHPFSSWQKQDIYPHERYYGVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
EEMQEAARRLLIFGMHVHIGMPDNETCIEIMNVARYFLPHLLALSTSSPFWMGRKTGFQS
HHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
YRSIIFTNFPRTGIPDTFQSYAEFEQYINILLKTHSIDNGKKVWWDARPHPMFGTLEVRI
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEE
CDIATKVDEAIMIAGLVQAIFVKIYSLFRQNQTFRVYSRALINENKWRAARYGMGGKLID
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCCEEC
FGRREELSAHDLMAELREFVDDVVDDLGSRAAVDYIDQVLKHGTSAERQLRTYEETGDIK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
AVVDQLIRETMEGVPLDQATQVVSG
HHHHHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA