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The map label for this gene is popC [H]

Identifier: 159901205

GI number: 159901205

Start: 5995222

End: 5996808

Strand: Direct

Name: popC [H]

Synonym: Haur_4693

Alternate gene names: 159901205

Gene position: 5995222-5996808 (Clockwise)

Preceding gene: 159901204

Following gene: 159901206

Centisome position: 94.46

GC content: 46.44

Gene sequence:

>1587_bases
ATGAGTGAGCAACTTTGCCGGGCGCGGATTGCCCAAAATGCCCAAACCCGTGAACCAACCCTCGATCTTTCATCACTCAA
CCTCACCAACCTACCAGAAACGATTGGCGAATTAACTCATCTTGAAGCATTAAATCTTGCCTGCAATCGTCCGCTGCAAC
TACCGCCTGAACTTGCAAACCTAACCAAGTTGCGCAAATTGGATCTCAGCTTTCCCCACCAATCTATAATTCCAGCATGG
CTCGATCAATTAACCAGCCTCGAAGAATTAGATATTCGGGCAAACCCGACCACTGGCATTCCCGAGGTTTTAACGCGATT
ACCACGTTTGCAGAAACTTAATCTTTATCTTGATGGATTTGAAGCATTGCCGAGCGAATTGCTTAATCTATCAACGCTAC
ACAATATTACGATTGGTTCAACAAAACTAACCAGATTACCTGATTGGTTCAGTGATTTGCGCATCACAGCTTTAGAATAC
TATCTCAATTCTATTCCTAACGAGCACTTAATTGGGGCGATAGACTCGCTTCAAGTGCTGGATCTACAGCTTTACTATGG
GAAACCTACAGCTTTTCCCGCATGGCTGAGGCAGATGCATCATTTACGCTGGCTTCGTTATAACAGCCAAGCACTGGTGC
CACCTTGGTTAATCGAATTACCGCAACTCTCGTATTTGGAAAGCAACGCCGATTTTAGCGAAATCAGCCAAGTTTGGCAT
TCATGGGAATCACTTGAACAGCTCAAGTGTGGTTATGTTGACGCGACGACCTTGCCACCAAACCTCAAAACCTTAGAAAT
ACCCATCAGCGGATCAGCAATTCCTGAATCAATTCGCCAAGTGCGCCAGCTTGAAGTGCTTCATTTATCGGGTAAAGGGT
TTCGCGAGTTGCCTGGCTGGGTTTTAGCATTGCCCAACTTGCACACCTTGGATCTTATCAGCACAGAGATTGATTACATC
CTAGCGCCTGACCAGCCGAACAATAGCCTACGAAAACTTATGATGCATACCCTCTACTGTGGTCGCAATCACCGCTTGGA
TGGTCTACGCAGCCTGCATAGGCTGGAAGAATTAAGCCTGAGTAATCATCGTCTCGGCCAGCTACCCGCATGGCTCTCCG
AATTGCAGCATTTACGCGAGTTGTCGATTGATGATTGCGAGTTGACCGATCTTGATCCAAGTTTGGGACAACTTCATCAG
CTTGAAGCACTCTATCTTCATGGCAATGCTATTCCGGTCGCGAGCTTAGAGTTAATGTTCCCCCGATTAACCAAACTCCA
GCATTTATCATTTGGGGTCGCAAACGATGAGTCATTTCCCGCTAGCCTTCGCCAATTGCATCAACTGCGTAGCTTGTATC
TGAGAATCGGGCCAGAGCACAGCATCCCTGAATGGTTGAATCAATTGACCAAACTCGAAAGCATTATGCTTGGCTATAAC
ATTCAGCCAACACAGATCCCTTGGATCGAAGGCTGGCTGGCACTGCCGAAATTACGCGAGATCGATATTCATATCAAGCC
AGAATTGTTTGATCCTGAGTTACTACAACGCTTTACCCAACGCGGCGTAAAAGTCAATCTTGGCTAA

Upstream 100 bases:

>100_bases
CCCTTGTAAGGGGCTTGGGGTCAGGGCATGACAATAATCAATGAGATTAAACCACCACTTCTTGAAACTAAGGAGTGGTG
GTTAGTTTAAGGAGTAGAAG

Downstream 100 bases:

>100_bases
ATTAACTATATGCCGAGGGTGAATCAACACAGCAACAACAATCCACAGCCCACATATTAGGGGTGCAGGGGATGAAAACC
CCTGCGTTTCCCGCCTTGAG

Product: leucine-rich repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 527

Protein sequence:

>528_residues
MSEQLCRARIAQNAQTREPTLDLSSLNLTNLPETIGELTHLEALNLACNRPLQLPPELANLTKLRKLDLSFPHQSIIPAW
LDQLTSLEELDIRANPTTGIPEVLTRLPRLQKLNLYLDGFEALPSELLNLSTLHNITIGSTKLTRLPDWFSDLRITALEY
YLNSIPNEHLIGAIDSLQVLDLQLYYGKPTAFPAWLRQMHHLRWLRYNSQALVPPWLIELPQLSYLESNADFSEISQVWH
SWESLEQLKCGYVDATTLPPNLKTLEIPISGSAIPESIRQVRQLEVLHLSGKGFRELPGWVLALPNLHTLDLISTEIDYI
LAPDQPNNSLRKLMMHTLYCGRNHRLDGLRSLHRLEELSLSNHRLGQLPAWLSELQHLRELSIDDCELTDLDPSLGQLHQ
LEALYLHGNAIPVASLELMFPRLTKLQHLSFGVANDESFPASLRQLHQLRSLYLRIGPEHSIPEWLNQLTKLESIMLGYN
IQPTQIPWIEGWLALPKLREIDIHIKPELFDPELLQRFTQRGVKVNLG

Sequences:

>Translated_528_residues
MSEQLCRARIAQNAQTREPTLDLSSLNLTNLPETIGELTHLEALNLACNRPLQLPPELANLTKLRKLDLSFPHQSIIPAW
LDQLTSLEELDIRANPTTGIPEVLTRLPRLQKLNLYLDGFEALPSELLNLSTLHNITIGSTKLTRLPDWFSDLRITALEY
YLNSIPNEHLIGAIDSLQVLDLQLYYGKPTAFPAWLRQMHHLRWLRYNSQALVPPWLIELPQLSYLESNADFSEISQVWH
SWESLEQLKCGYVDATTLPPNLKTLEIPISGSAIPESIRQVRQLEVLHLSGKGFRELPGWVLALPNLHTLDLISTEIDYI
LAPDQPNNSLRKLMMHTLYCGRNHRLDGLRSLHRLEELSLSNHRLGQLPAWLSELQHLRELSIDDCELTDLDPSLGQLHQ
LEALYLHGNAIPVASLELMFPRLTKLQHLSFGVANDESFPASLRQLHQLRSLYLRIGPEHSIPEWLNQLTKLESIMLGYN
IQPTQIPWIEGWLALPKLREIDIHIKPELFDPELLQRFTQRGVKVNLG
>Mature_527_residues
SEQLCRARIAQNAQTREPTLDLSSLNLTNLPETIGELTHLEALNLACNRPLQLPPELANLTKLRKLDLSFPHQSIIPAWL
DQLTSLEELDIRANPTTGIPEVLTRLPRLQKLNLYLDGFEALPSELLNLSTLHNITIGSTKLTRLPDWFSDLRITALEYY
LNSIPNEHLIGAIDSLQVLDLQLYYGKPTAFPAWLRQMHHLRWLRYNSQALVPPWLIELPQLSYLESNADFSEISQVWHS
WESLEQLKCGYVDATTLPPNLKTLEIPISGSAIPESIRQVRQLEVLHLSGKGFRELPGWVLALPNLHTLDLISTEIDYIL
APDQPNNSLRKLMMHTLYCGRNHRLDGLRSLHRLEELSLSNHRLGQLPAWLSELQHLRELSIDDCELTDLDPSLGQLHQL
EALYLHGNAIPVASLELMFPRLTKLQHLSFGVANDESFPASLRQLHQLRSLYLRIGPEHSIPEWLNQLTKLESIMLGYNI
QPTQIPWIEGWLALPKLREIDIHIKPELFDPELLQRFTQRGVKVNLG

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI238908508, Length=448, Percent_Identity=25.2232142857143, Blast_Score=94, Evalue=5e-19,
Organism=Homo sapiens, GI41281398, Length=484, Percent_Identity=28.7190082644628, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI8923909, Length=450, Percent_Identity=24.6666666666667, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI55770895, Length=450, Percent_Identity=24.6666666666667, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI110825984, Length=210, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI16904383, Length=398, Percent_Identity=25.8793969849246, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI21389431, Length=197, Percent_Identity=28.4263959390863, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI21361633, Length=517, Percent_Identity=23.4042553191489, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI95113664, Length=394, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71981152, Length=501, Percent_Identity=28.9421157684631, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71991531, Length=452, Percent_Identity=25, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71991525, Length=452, Percent_Identity=25, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71981160, Length=501, Percent_Identity=27.7445109780439, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221379725, Length=463, Percent_Identity=28.9416846652268, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221379722, Length=463, Percent_Identity=28.9416846652268, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI19922294, Length=408, Percent_Identity=26.9607843137255, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24650336, Length=388, Percent_Identity=26.2886597938144, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI62472958, Length=388, Percent_Identity=26.0309278350515, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650330, Length=388, Percent_Identity=26.0309278350515, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24650334, Length=388, Percent_Identity=26.2886597938144, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24650332, Length=388, Percent_Identity=26.2886597938144, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007092, Length=388, Percent_Identity=26.0309278350515, Blast_Score=67, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281362651, Length=388, Percent_Identity=26.2886597938144, Blast_Score=66, Evalue=7e-11,
Organism=Drosophila melanogaster, GI281362653, Length=388, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI281362655, Length=388, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI281362657, Length=388, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 60390; Mature: 60259

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQLCRARIAQNAQTREPTLDLSSLNLTNLPETIGELTHLEALNLACNRPLQLPPELAN
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LTKLRKLDLSFPHQSIIPAWLDQLTSLEELDIRANPTTGIPEVLTRLPRLQKLNLYLDGF
HHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHCCCCEEEHEEECCH
EALPSELLNLSTLHNITIGSTKLTRLPDWFSDLRITALEYYLNSIPNEHLIGAIDSLQVL
HHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEE
DLQLYYGKPTAFPAWLRQMHHLRWLRYNSQALVPPWLIELPQLSYLESNADFSEISQVWH
EEEEEECCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHCCCCHHHHHCCCCHHHHHHHHH
SWESLEQLKCGYVDATTLPPNLKTLEIPISGSAIPESIRQVRQLEVLHLSGKGFRELPGW
HHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCCCCCE
VLALPNLHTLDLISTEIDYILAPDQPNNSLRKLMMHTLYCGRNHRLDGLRSLHRLEELSL
EEECCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
SNHRLGQLPAWLSELQHLRELSIDDCELTDLDPSLGQLHQLEALYLHGNAIPVASLELMF
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCCHHHHHHHH
PRLTKLQHLSFGVANDESFPASLRQLHQLRSLYLRIGPEHSIPEWLNQLTKLESIMLGYN
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
IQPTQIPWIEGWLALPKLREIDIHIKPELFDPELLQRFTQRGVKVNLG
CCCCCCCHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEECC
>Mature Secondary Structure 
SEQLCRARIAQNAQTREPTLDLSSLNLTNLPETIGELTHLEALNLACNRPLQLPPELAN
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LTKLRKLDLSFPHQSIIPAWLDQLTSLEELDIRANPTTGIPEVLTRLPRLQKLNLYLDGF
HHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHCCCCEEEHEEECCH
EALPSELLNLSTLHNITIGSTKLTRLPDWFSDLRITALEYYLNSIPNEHLIGAIDSLQVL
HHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEE
DLQLYYGKPTAFPAWLRQMHHLRWLRYNSQALVPPWLIELPQLSYLESNADFSEISQVWH
EEEEEECCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHCCCCHHHHHCCCCHHHHHHHHH
SWESLEQLKCGYVDATTLPPNLKTLEIPISGSAIPESIRQVRQLEVLHLSGKGFRELPGW
HHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCCCCCE
VLALPNLHTLDLISTEIDYILAPDQPNNSLRKLMMHTLYCGRNHRLDGLRSLHRLEELSL
EEECCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
SNHRLGQLPAWLSELQHLRELSIDDCELTDLDPSLGQLHQLEALYLHGNAIPVASLELMF
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCCHHHHHHHH
PRLTKLQHLSFGVANDESFPASLRQLHQLRSLYLRIGPEHSIPEWLNQLTKLESIMLGYN
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
IQPTQIPWIEGWLALPKLREIDIHIKPELFDPELLQRFTQRGVKVNLG
CCCCCCCHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]